Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01005 ATGGATCATCACCAGCCTGGTCCTTCTTCAACCAAAGTTGAAAGAAGGATTGCTGAGAAGAACAGGAGAAACCAAATGAAGACCCTCTATGCCAAACTCAACTCTCTTCTCCCTAACTATAATCCCAAAGAATTGTTACCATTGCCTGATCAAATAGATGAGGCTATCAACTATATCAAGAGCCTAGAGACAAAGGTGAAGGTGGCACAAGAAAAGAAAGAAAGCTTAATGGAAAAGAAGAGGTCTCGTGGAAGCTGCTCGAGTGCTTCTGAAGCTAAAGGAAGCCTAAAATCACCAAAAATTGAGATTCATGAAATGGGTACCTTGCTACAAGTCATTCTAAAGTGTGGGATTGATGACCGGTTCATTTTCATTGAAATTATTCGAATACTGCATGAAGAGAACGTGGAGGTCATCACTGCTAACTCTTCAATGGCTGGAGATTCAGTGCTTCATGTTGTGGAAGCTGAGATTCGGCAATCTCTCTTTCCATTAGGAGCGACCAAAGTGAGTGAGAGATTGGAAAAGTTTGTGAATGGATCCGTCAGTGATGTGGAGATAGAACCTGAATTGTGGGACTTTGAAATTGGAAATGAGATTTGGGGGCTTCTAGATCCCACAGTAAACAAGGTTCAACGAATCCATTGTAAAAGAAGCAGAGATTAA 666 0.4129 MDHHQPGPSSTKVERRIAEKNRRNQMKTLYAKLNSLLPNYNPKELLPLPDQIDEAINYIKSLETKVKVAQEKKESLMEKKRSRGSCSSASEAKGSLKSPKIEIHEMGTLLQVILKCGIDDRFIFIEIIRILHEENVEVITANSSMAGDSVLHVVEAEIRQSLFPLGATKVSERLEKFVNGSVSDVEIEPELWDFEIGNEIWGLLDPTVNKVQRIHCKRSRD* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01005 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Rops7g01005 221 Coils Coil 52 79 - -
Rops7g01005 221 Gene3D - 5 90 IPR036638 GO:0046983
Rops7g01005 221 MobiDBLite consensus disorder prediction 1 22 - -
Rops7g01005 221 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 177 - -
Rops7g01005 221 SMART finulus 16 68 IPR011598 GO:0046983
Rops7g01005 221 FunFam Transcription factor bHLH162 2 88 - -
Rops7g01005 221 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
Rops7g01005 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 81 IPR036638 GO:0046983
Rops7g01005 221 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01005 Rops-Chr7 13305269 13306119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01005 4 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.935 2.48e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g01005 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01005 - - gmx:100784042 278.485