Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01004 ATGTCTCTTTGTACCTTTTGCTTCCTTCTTAATACAACTCTTCTAGTACTGAGTTCCGTGTCAGCAACTGAATTTGTCTATAACAGAAACTTCAACTCTTCCAACATAAAGCTCTATGGGAATGCCACTATCCAAAACTCCATTCTTACTCTTACTAACCAGACTTTTTTCACCATTGGCCGTGCCTTTTACCCTTTTAGTGTACCTATGAAATCACACAACTCTACCACCCCACTTCCCTTTGCAACCTCTTTTATCTTCTCCATGGCTCCTTGTAAGAACTTCCCTGTTGCTCATGGTTTTGCTTTCATTTTCTCACCTGGGATGGTCATAGATGGAGCACTCTCAGGGAATTATATGGGACTTTTCAACCGCTCCACTTCAGGTAATTCTTCCAGCCATGTTTTTGCTGTAGAGTTTGATGATTTTAGAAACGAAGAGTTCAATGAAGTTAATGATAATCATGTGGGGGTTGACTTGAATTCAATGATTTCTTTGTATTCTGAACCTGCTGGGTTCTGGGGTGGAAAAGATGGTGAGGAATTGGAGAAGTTGGAACTGGCTAGTGGTCAAAACTATCAAGTTTGGATTGAGTTTGAGAATTCACAAATTAATGTTACCATGGCCCCAGCAGGGAAAAAGAAGCCTCAAAGGCCTTTGATTAGTAAGCCTATTAACCTTTCAGATGTTTTGTTGGATGAAATGTATGTGGGATTTTCTGGAGCAACAGGGAGAATGGTGGACATTTGTAGAATTTTGGCTTGGAGTTTTAGCCATTCAAACTTTTCAATTGGTGATGCTTTGAATACCCAACATTTACCCTTGTATGTGCATCCAAGGAGATTGATATATAGATCAAATGGTTTCATTATTGGTGTCGTTTTTTGTGCACTGTTTGTCAGTGGTTGCTGCACTTTGGTGTTGTTCACTTTGTTCAGAACAAAAAGGGAAGAGATAGAGGAAATAATTGAAGATTGGGAATTGGAGTATTGGCCACATAGGATTAGCTATCAGGAGATTTGTGATGCAACAAGTGGATTCTCTGAAGAAAAAGTGATTGGTATTGGAACAAGTGGGAAAGTATACAAAGGAGTTTTGAAAGGAGTAGAAGTTGCAGTGAAGAGTATCAATCATAACACTCAGCATGGAATGAGAGGGTTTCTGGCAGAGATTTCAAGCCTAGGCAGAATGAAACACAGAAATTTAGTGGGTTTCAGAGGTTGGAGTAAAAGCAAAGGAGGAAAGTTGATACTGGTTTATGATTACATGGTGAATGAGAGCTTGGACAAATGGATCTTTGAGTGTGAAGAGACCATGCTGCTGAGTTGGGAAGAAAGAATTAAAGTTTTAAAAAACGTAGCTTGTGGAATTTTATATCTACATGAGGGTTGGGAGGTTGAGGTATTGCATAGAGACATCAAAGCAAGTAACGTGCTACTTGACAAGGACATGAATGCAAGATTGGGAGATTTTGGACTTGCCAGGTTGCATCACCAGGAACATGTGCCTGACACAACAAGAGTAATAGGGACTTTGGGGTACATGGCACCAGAATTAGTCCGAATTGGTAGACCATCAACTGCATCTGATGTGTATAGTTTTGGGATTTTGGTTTTAGAAGTGATATGTGGGAGAAGACCCATTGAAGTAGATAAGCCATCATTGGTTGATTGGGTATTTTCCCTTATGGAGAAAGGGGAATTGAGTTGTGCCATTGATGAGCGTTTGAAGAAGGCTCAAATTGGATACAGCACTGAGGAAGCTGAGAGACTGCTTCATTTGGGTTTGCTATGTGCAAGTGTAGATCATAGTGTTAGGCCAACAATGAGGCTAGTGGTGAAAGCCTTGGAGGGAATAAAATGCACTGAGTGTAATGAAGAGTGCATCCATGTTGGTCTTATTGGAAAAATAAACTCAGCAGCATCATGGTCTAGGAGTTCTAGTAGTTCTGCCCATGTAAATTTTCCTACCTTAGATGAAATTTCACCTTCCAAATTTTATTCTACAGCATCTTTAAGTGTCTTTTATCCCAGTCCACAGCCAGAGTCAGATTTTGTCTCAGAAGGAAGGTGA 2073 0.4014 MSLCTFCFLLNTTLLVLSSVSATEFVYNRNFNSSNIKLYGNATIQNSILTLTNQTFFTIGRAFYPFSVPMKSHNSTTPLPFATSFIFSMAPCKNFPVAHGFAFIFSPGMVIDGALSGNYMGLFNRSTSGNSSSHVFAVEFDDFRNEEFNEVNDNHVGVDLNSMISLYSEPAGFWGGKDGEELEKLELASGQNYQVWIEFENSQINVTMAPAGKKKPQRPLISKPINLSDVLLDEMYVGFSGATGRMVDICRILAWSFSHSNFSIGDALNTQHLPLYVHPRRLIYRSNGFIIGVVFCALFVSGCCTLVLFTLFRTKREEIEEIIEDWELEYWPHRISYQEICDATSGFSEEKVIGIGTSGKVYKGVLKGVEVAVKSINHNTQHGMRGFLAEISSLGRMKHRNLVGFRGWSKSKGGKLILVYDYMVNESLDKWIFECEETMLLSWEERIKVLKNVACGILYLHEGWEVEVLHRDIKASNVLLDKDMNARLGDFGLARLHHQEHVPDTTRVIGTLGYMAPELVRIGRPSTASDVYSFGILVLEVICGRRPIEVDKPSLVDWVFSLMEKGELSCAIDERLKKAQIGYSTEEAERLLHLGLLCASVDHSVRPTMRLVVKALEGIKCTECNEECIHVGLIGKINSAASWSRSSSSSAHVNFPTLDEISPSKFYSTASLSVFYPSPQPESDFVSEGR* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01004 690 Pfam Protein kinase domain 348 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01004 690 CDD lectin_legume_LecRK_Arcelin_ConA 23 258 IPR001220 GO:0030246
Rops7g01004 690 Gene3D Phosphorylase Kinase; domain 1 333 422 - -
Rops7g01004 690 SMART serkin_6 347 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g01004 690 Pfam Legume lectin domain 23 261 IPR001220 GO:0030246
Rops7g01004 690 FunFam L-type lectin-domain containing receptor kinase S.4 423 628 - -
Rops7g01004 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 264 IPR013320 -
Rops7g01004 690 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 308 422 - -
Rops7g01004 690 FunFam L-type lectin-domain containing receptor kinase S.4 21 265 - -
Rops7g01004 690 SUPERFAMILY Protein kinase-like (PK-like) 324 617 IPR011009 -
Rops7g01004 690 ProSitePatterns Protein kinases ATP-binding region signature. 353 374 IPR017441 GO:0005524
Rops7g01004 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Rops7g01004 690 Gene3D Transferase(Phosphotransferase) domain 1 423 632 - -
Rops7g01004 690 Gene3D - 21 265 - -
Rops7g01004 690 PANTHER - 40 618 - -
Rops7g01004 690 ProSiteProfiles Protein kinase domain profile. 347 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01004 Rops-Chr7 13274049 13276421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01004 20 569 Receptor kinase-like Gene Family AT4G04960 54.676 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Rops7g01004 Pkinase 6.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01004 - - vum:124844866 1098.96