Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops7g01002 | ATGGGGTGCATAACTTCCAAGAGTTCAGCTGTGGAAGACAGCAGGGAAGGTTTTACAAATGAATTGAAATCATCTAGCAAAAGGACCTCAGAGATGAAGGTTTCACGTTTGAATACCAAGAAAAGGGTTGAGAAAGACCAGTCCTTAGATGGTGTTGATATGAAGGTTTCATTGATTGACAAGAAGGCCAATGGTTCAGAATGGTTGTGTGATGATCAGAATAGGAAGAAGAATATGGAGAAACCTGAATTGAGTGTTATTGATTATCCTGGTCTTGGAAGGATTCCAAAGGCTTCAGAAGGTGAGCAAGTTGCAGCAGGATGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCAAGGGATGGATACCACGGTGTGCAAATACTTTTGAGAGGTTTTATAAAATTGGTGAAGGAACTTACAGCACTGTTTATAAGGCACGTGATGTGACTCACCAAAAGATTGTTGCCTTGAAGAGGGTACGATTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGCTTGATAGCATCGCAAACATCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTGCATCAGGTCCTGGCATTAAGTTTTCTGAACCACAGATTAAATGCTACATGCAGCAGCTCCTTAATGGATTGGATCATTGTCATAGTTGTGGTGTTCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCATCTTAAAGATTGCTGATTTTGGTTTGGCGAATTTTTTTGACCCCCATCACTGTGTTTCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGAGCATCTAGTTATGGAGTTGCAGTGGATTTGTGGAGTGCTGGTTGCATACTTGGGGAACTATACCATGGCAGGCCCATATTGCCTGGAAAAACAGAGGTTGAACAATTGCATAGGATTTTTAAACTTTGTGGCTCACCATCTGAGGACTATTGGCGTAAACTGCGGTTGCCTCATTCAACAGTATTCAGACCTCCCCACCATTATAGGCGTTGTGTTGCTGAAACATTTAAAGAATATTCATCTGCTGCCTTGAGGCTTATAGAGACCCTACTTTCTGTAGATCCTACACTTCGAGGAACAGCATCTACAGCTCTGAAGAGTGAGTTCTTTTCATCGGAACCCCTTGCTTGTGATCCATCGAGTTTACCAAAATATCCTCCCAGCAAAGAGATTGACACTAAATTGCGGGAAGAAGCAACAAGAAGGCAAGGAGCTGTTAGGGGAAAGGAGCAAAAAGTTGGGCCTGGAGTTAGACAAGAGAAGGAACCTCGAGCATTTGTCTTGTCCAAAGACAATGTTGACTCCCACATATCAATGCAGCAAGGACAACGCCTTCTGAACTCAAAGAGCGGGAATGAATTGTTCAACCCTCACAGAGAACCTGTGTCTGGATTTTTCGTTTTGCCACACAAACACTCAGATGATGCTAAAGAAATGGTAAATTATTTCTCTGGGCCTCTTTATCAGAGGCCTTCACATTCAGGTTCATTGGTTCCTGGTTCAGGCTGGGACAAGGTTGGAAAAGAAGCTGGTGAGTGGCAACCTTCTGTTTCAAACAAAGTCAACCTACCAAAACCATCTGGGTTAGTGACATCTAGGACTTCATTATCTGGAAATCAAAAGGAAAACCCAGTTCCCTTGAGGCCCCGAGAAACAATTCAAGTACAAAAGTCTTTGGAGTCAACTAATGGATCAGAATCAAGAAGAAGGCATGATAAAAAACGCCAGTCTCAGAAAATTGATCACAGCCGAATAGAAAATAGAAAGGAGGGGCATGGGTCCATGGGACAAAATATCTATCTGTCTGGTCCATTGCTGGTTTCATCAAACAATATGGATCAGATGCTCAAAGAGCGTGATAGAAAGATCCAAGAATATTCAAGACGAGCCCGAATTGACAAGTCTAAAAGGTGA | 2049 | 0.4246 | MGCITSKSSAVEDSREGFTNELKSSSKRTSEMKVSRLNTKKRVEKDQSLDGVDMKVSLIDKKANGSEWLCDDQNRKKNMEKPELSVIDYPGLGRIPKASEGEQVAAGWPTWLSSVAGEAIKGWIPRCANTFERFYKIGEGTYSTVYKARDVTHQKIVALKRVRFDNLDPESVKFMAREILVLRRLDHPNVIKLEGLIASQTSRSLYLVFEYMEHDLTGLASGPGIKFSEPQIKCYMQQLLNGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLANFFDPHHCVSLTSRVVTLWYRPPELLLGASSYGVAVDLWSAGCILGELYHGRPILPGKTEVEQLHRIFKLCGSPSEDYWRKLRLPHSTVFRPPHHYRRCVAETFKEYSSAALRLIETLLSVDPTLRGTASTALKSEFFSSEPLACDPSSLPKYPPSKEIDTKLREEATRRQGAVRGKEQKVGPGVRQEKEPRAFVLSKDNVDSHISMQQGQRLLNSKSGNELFNPHREPVSGFFVLPHKHSDDAKEMVNYFSGPLYQRPSHSGSLVPGSGWDKVGKEAGEWQPSVSNKVNLPKPSGLVTSRTSLSGNQKENPVPLRPRETIQVQKSLESTNGSESRRRHDKKRQSQKIDHSRIENRKEGHGSMGQNIYLSGPLLVSSNNMDQMLKERDRKIQEYSRRARIDKSKR* | 683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops7g01002 | 682 | MobiDBLite | consensus disorder prediction | 659 | 682 | - | - | |
| Rops7g01002 | 682 | MobiDBLite | consensus disorder prediction | 445 | 465 | - | - | |
| Rops7g01002 | 682 | CDD | STKc_CDK9_like | 131 | 415 | - | - | |
| Rops7g01002 | 682 | FunFam | probable serine/threonine-protein kinase At1g54610 | 214 | 455 | - | - | |
| Rops7g01002 | 682 | FunFam | probable serine/threonine-protein kinase At1g54610 | 118 | 213 | - | - | |
| Rops7g01002 | 682 | ProSitePatterns | Protein kinases ATP-binding region signature. | 137 | 160 | IPR017441 | GO:0005524 | |
| Rops7g01002 | 682 | Gene3D | Phosphorylase Kinase; domain 1 | 125 | 218 | - | - | |
| Rops7g01002 | 682 | Gene3D | Transferase(Phosphotransferase) domain 1 | 219 | 453 | - | - | |
| Rops7g01002 | 682 | PANTHER | CELL DIVISION PROTEIN KINASE | 129 | 420 | - | - | |
| Rops7g01002 | 682 | ProSiteProfiles | Protein kinase domain profile. | 131 | 415 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops7g01002 | 682 | SUPERFAMILY | Protein kinase-like (PK-like) | 125 | 421 | IPR011009 | - | |
| Rops7g01002 | 682 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 251 | 263 | IPR008271 | GO:0004672|GO:0006468 | |
| Rops7g01002 | 682 | MobiDBLite | consensus disorder prediction | 14 | 37 | - | - | |
| Rops7g01002 | 682 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Rops7g01002 | 682 | Pfam | Protein kinase domain | 132 | 415 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops7g01002 | 682 | SMART | serkin_6 | 131 | 415 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops7g01002 | 682 | MobiDBLite | consensus disorder prediction | 560 | 587 | - | - | |
| Rops7g01002 | 682 | MobiDBLite | consensus disorder prediction | 559 | 682 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops7g01002 | Rops-Chr7 | 13258227 | 13264248 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops7g01002 | 123 | 458 | Core Cell Cycle Gene Families | AT5G10270 | 49.716 | 3.21e-112 | 346 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CMGC_CDK-CRK7-CDK9 | Rops7g01002 | Pkinase | 5.9e-67 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops7g01002 | - | K08819 | gmx:100781209 | 1078.16 |