Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00986 ATGATGGATTGCACTGGCAATGGGGATGGGGATGGTGATGGTGATGGTGATGGGGATGGTGATGGTGATGGTGTTTTCCATATTCATTCTTCTCCCAACCAAGGTTTTTTCAGAGCTTGCACTTTGCTCCCTTCAACACACAACTCTCTTACCTTCTTCCCTTTCCGTTTGCTTATCTTTTCTATTCAGGCACCCATCAGAGAGCACATTGTAAGACAACAGAAAAAAATGGCAAATCAGTATTTTGAAGAGGAAGTTCCCCAGATAGGTTCCTTGGAAAATAAATCATCTTTGGAAATGTGGAAATGTGCTAGTGATGCTACTGCAGATTCTGATAGAAATGCCTCTAATGGCTTTGACTGCAACATCTGCCTGGATTGCGTGCAAGATCCAGTGGTCACTCTGTGTGGTCATCTGTACTGCTGGCCCTGCATTTACAAATGGCTTAATTCTCATAACATCTCATCTGAATATGAAGAGAAGCTGATGCAGAAGCCACAATGTCCCGTTTGCAAATCAGAAATTTCAGAGTCATCTCTTGTTCCACTATATGGCCGTGGCCAAAACACATCACCTTCTAAACACGAGGCACATCAAGTAGGGAATGTTATACCTCGAAGACCTCATGGTCCTTCATGGGGGGATGAATTGCCAAGATCACTTGATAATGCAACTACTTCTCAACCTACTTCTCAAGCTTATCACCCTCATTATCGTTACCATCCTCAACAATTCAATTCAGTTCCAGGAAGTTACACTTCACCAATGCTTAACCCTGGTGGCTCACTAACTTATGGAGTCTTTGGTGAGATGATATATTCAAGGGTCTTTGGAAACCAAGTGACAAACATATACACATCCCCCAATTCATATGATCTTCAAGGGGTCAGTAATCCAAGGATCAGAAGGCATTTAATGCAAGCTGATAGATCACTCGGTAGAATCTGTTTTTTCCTCCTTTGTTGCATAGTTTTGTGTCTTCTGTTATTCTGA 993 0.422 MMDCTGNGDGDGDGDGDGDGDGDGVFHIHSSPNQGFFRACTLLPSTHNSLTFFPFRLLIFSIQAPIREHIVRQQKKMANQYFEEEVPQIGSLENKSSLEMWKCASDATADSDRNASNGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLNSHNISSEYEEKLMQKPQCPVCKSEISESSLVPLYGRGQNTSPSKHEAHQVGNVIPRRPHGPSWGDELPRSLDNATTSQPTSQAYHPHYRYHPQQFNSVPGSYTSPMLNPGGSLTYGVFGEMIYSRVFGNQVTNIYTSPNSYDLQGVSNPRIRRHLMQADRSLGRICFFLLCCIVLCLLLF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00986 330 Pfam Zinc finger, C3HC4 type (RING finger) 121 171 IPR018957 GO:0046872
Rops7g00986 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 203 IPR013083 -
Rops7g00986 330 ProSiteProfiles Zinc finger RING-type profile. 121 172 IPR001841 -
Rops7g00986 330 SMART ring_2 121 171 IPR001841 -
Rops7g00986 330 SUPERFAMILY RING/U-box 113 178 - -
Rops7g00986 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 82 327 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops7g00986 330 MobiDBLite consensus disorder prediction 188 215 - -
Rops7g00986 330 ProSitePatterns Zinc finger RING-type signature. 136 145 IPR017907 -
Rops7g00986 330 MobiDBLite consensus disorder prediction 1 25 - -
Rops7g00986 330 CDD RING-HC_AtRMA-like 119 173 - -
Rops7g00986 330 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 104 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00986 Rops-Chr7 13129001 13142466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00986 114 330 C3H Transcription Factor Family AT4G28270 39.819 1.07e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00986 K10666 - gmx:100785491 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00986 7 13129001 13142466 Rops7g00986 7 13129001 13142466 ECH