Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00982 ATGGGTGCTCTACAATCTACATTTCTCTACCTGATTTTATTACAGGCATGCAAGATTGTTGCTTATGGGGAAGAAGAATGGAAGTCTGCCACTGCAACATACATCAAAGATAAAGAGGGATCACTCATTACAGAAGGAGCTTGTGGTTATGGAGACCTCCACAAGTGCTTGCTGGGAAGCCCCTCTGTAGTTGTTACTGCTACGGATTTCTGTGCTCCAAATTATGGACTTCCAGCTGATTATGGTGGCTGGTGTAATTTTCCAAGAGAACATTTTGAGATGTCAGAAGCTGCATTTGCTGAAATTGCCAAGAAAAAATCTGATATAGTGCCAGTTCAATATAGAAGGGTAAAATGTCAAAGGAGTGGTGGCATGAAATTCACAATGAGTGGAAGTTATCACTTCTATCAAGTTCTGATTATCAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTGAAAGTGAAGGGAACTATAACAGGATGGATACCAATGGCAAGGAATTGGGGACAGAATTGGCATTGCAATGTGAACCTTCAACGACAGCCTCTGTCTTTTGAGGTGACCATCAGCAGTGGAAAAACACTCACATCTTACAATGTAGCCCCTGCAAACTGGCAATTTGGACAGACATTTGAAGGAAAACAGTTCTAG 651 0.4194 MGALQSTFLYLILLQACKIVAYGEEEWKSATATYIKDKEGSLITEGACGYGDLHKCLLGSPSVVVTATDFCAPNYGLPADYGGWCNFPREHFEMSEAAFAEIAKKKSDIVPVQYRRVKCQRSGGMKFTMSGSYHFYQVLIINVGLDGEVVAVKVKGTITGWIPMARNWGQNWHCNVNLQRQPLSFEVTISSGKTLTSYNVAPANWQFGQTFEGKQF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00982 216 Pfam Expansin C-terminal domain 126 202 IPR007117 -
Rops7g00982 216 SUPERFAMILY Barwin-like endoglucanases 12 142 IPR036908 -
Rops7g00982 216 SUPERFAMILY PHL pollen allergen 121 213 IPR036749 -
Rops7g00982 216 Gene3D - 54 120 IPR036908 -
Rops7g00982 216 Gene3D - 124 216 IPR036749 -
Rops7g00982 216 SMART dpbb_1 30 114 IPR007112 -
Rops7g00982 216 PANTHER EXPANSIN-A15 11 55 IPR002963 GO:0009664
Rops7g00982 216 PRINTS Expansin signature 63 73 IPR002963 GO:0009664
Rops7g00982 216 PRINTS Expansin signature 82 99 IPR002963 GO:0009664
Rops7g00982 216 PRINTS Expansin signature 135 156 IPR002963 GO:0009664
Rops7g00982 216 PRINTS Expansin signature 123 135 IPR002963 GO:0009664
Rops7g00982 216 PRINTS Expansin signature 99 112 IPR002963 GO:0009664
Rops7g00982 216 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Rops7g00982 216 PRINTS Expansin signature 199 215 IPR002963 GO:0009664
Rops7g00982 216 Pfam Lytic transglycolase 56 114 IPR009009 -
Rops7g00982 216 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 134 213 IPR007117 -
Rops7g00982 216 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 124 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00982 Rops-Chr7 13075387 13076542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00982 3 216 Expansin Gene Family AT4G38210 53.386 2.17e-93 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00982 - - gmx:100809013 373.629