Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00962 ATGGAACCCAGAAATAAGAGATCTCGAGCCAATCGTTTTCCAATTCCTTTTCCAGTCAATAACAACTACGAAAAGGATGATCGTGGGTTTCTGCCTTGGTCAATCTGCTATGAGTTTGGAAACCAAATTGGTCGATCTCCATCTGTTTTAACTTCTGGAGGAAGAGTTTTCCAGTTTCGATTCATCAGAACTTTAATGGGTGGAGTTTTCACCAATGGATGGAAGGAATTTATTGATTATTTCAATCTAAATGGTTGTCAATCAGTAACATTGACTTACCATGAGCTTACCTGCTGCAATGGTATCTTCTTGCTTGAATTTAAAAAAAAGTCTATTATTTTCAATGTGGGAGGTGGAAGGACTTGGAAATTTGGTTTATACCATCATGAAAGCCGTGGTTCTGAAGCCAGGATATCCACTGGATGGAAATCCTTTTGCGCGGATCACCAATTAAAAGCAGGGGACAAAATTGTTGTTGAGGTTGCTGATGCATTAAAGAACCACTTCAATGCTGACATTGTTAGAGTTTCAATGCAATCAAATCCTTCCAAAAATGCTAGAAAATCAAGGATGGAAGACCTGAAACGAAAACGTTCAAACACAAAAGCAAATCAAGGTATCTCTATGCAACCAGTTAATAGTAAATATCCTTCAAAAAGATCTCCTTTATCTTCCATTGAAAATGGTTGTATGAGCTCTATATCAACTATTGTTGACCCATCAAAGCAACTAACGATCACAAACAAAGATGTTCGACGGTCTTCTATTATTAATGAAATTCGATGGAATGGTTCAAGTGATTCAATTGAAATTGGAAGGGATGTATTGATATCTTCCAGTAATTCCATAGAGTTAGGAGATGGGGATGTTGACTCTGCCAATGATTACCAATTTGACCGTGATATATATAAATTAAGTGAGCAACAAGCATGTTTGGATTTTGGAGATTCTTCTTTTCGTTGCTCTTTTTGTCAAGCATCTGTTTGGTATGAAGAGAGATATGAAAAATCAAAGTCTTCTAAAAACCCTGATTTTTCTATTTGTTGTATGAAAGGAAAGGTACAATTGCCGTTTTTGGAAAAACCCCCAATACTTTTGGGGAATCTTATGCATGGAATTGATCATAGAAGCTCTAATTTTATTCAAAACATTCGGCAATACAACAACATGTTTGCATTCACATCTATAGGAGGCAAGGTTGAGACTTCTTTAAACAATGGAACTGCAGCTCCACAGTTCATTCTTAGTGGGCAGAACTTTCATAGAATTGGATCTTTACTTCCAATTGATGGACAACTTCCCAAGTTTGCTCAACTATATATATATGACACCCAAAATGAGATATCAAACAGAATGAAGCCCTTCAGGTAA 1371 0.3647 MEPRNKRSRANRFPIPFPVNNNYEKDDRGFLPWSICYEFGNQIGRSPSVLTSGGRVFQFRFIRTLMGGVFTNGWKEFIDYFNLNGCQSVTLTYHELTCCNGIFLLEFKKKSIIFNVGGGRTWKFGLYHHESRGSEARISTGWKSFCADHQLKAGDKIVVEVADALKNHFNADIVRVSMQSNPSKNARKSRMEDLKRKRSNTKANQGISMQPVNSKYPSKRSPLSSIENGCMSSISTIVDPSKQLTITNKDVRRSSIINEIRWNGSSDSIEIGRDVLISSSNSIELGDGDVDSANDYQFDRDIYKLSEQQACLDFGDSSFRCSFCQASVWYEERYEKSKSSKNPDFSICCMKGKVQLPFLEKPPILLGNLMHGIDHRSSNFIQNIRQYNNMFAFTSIGGKVETSLNNGTAAPQFILSGQNFHRIGSLLPIDGQLPKFAQLYIYDTQNEISNRMKPFR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00962 456 SMART B3_2 61 177 IPR003340 GO:0003677
Rops7g00962 456 MobiDBLite consensus disorder prediction 186 200 - -
Rops7g00962 456 SUPERFAMILY DNA-binding pseudobarrel domain 25 94 IPR015300 -
Rops7g00962 456 MobiDBLite consensus disorder prediction 201 221 - -
Rops7g00962 456 ProSiteProfiles B3 DNA-binding domain profile. 119 177 IPR003340 GO:0003677
Rops7g00962 456 Pfam B3 DNA binding domain 108 164 IPR003340 GO:0003677
Rops7g00962 456 Gene3D - 97 178 IPR015300 -
Rops7g00962 456 PANTHER DNA BINDING PROTEIN-LIKE 359 448 - -
Rops7g00962 456 SUPERFAMILY DNA-binding pseudobarrel domain 109 170 IPR015300 -
Rops7g00962 456 CDD B3_DNA 103 160 IPR003340 GO:0003677
Rops7g00962 456 MobiDBLite consensus disorder prediction 179 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00962 Rops-Chr7 12682524 12687224 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops7g00962 B3 1.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00962 - - vun:114184753 220.32