Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00947 ATGAAGATTGCTTCCTTCTTCACCAAGGCCTTCCACACCTTCCCTTCTTGCTCTAAGCTTGTGCTCCTCTGTGCTCTCAGTGGTGGAGGTGTGGTGTCATACTCAGAATTACAATCAGGCAGTGAAAAACCTCATGCTCCTAGTATAGATCCTAATGAACCCAAGAAGAAGAAATTGGTGGTTCTGGGAACAGGATGGGCTGGTACCAGTTTCCTTAAGGATCTCGACGCTTCCCTATATGATGTTCAGGTTGTTTCACCTCGTAATTACTTTGCATTCACTCCTTTATTACCAAGTGTCACTTGTGGGACCGTTGAAGCACGGAGCATTGTAGAGCTAGTCCGAAACATCATTAAAAAGAGAAAAGGAGTAATTAAATTTTGGGAGGCAGAATGCCTGAAGATTGATTATGTAAACAAAAAGGTTTTATGTCGGTCTAATATTGACAACAACTTAGTGGGAAGTGGTGAATTTTCTTTGGACTATGACTACTTGGTTATAGCAATAGGAGCACAAGTAAATACATTTAACACCCCTGGTGTCATGGAGCATTGTCATTTCCTGAAGGAGGTAGAGGATGCTCAGAAGATCAGAATGTCTGTGATAGATTGCTTTGAGAAGGCTGTTCTTCCCTCTCTATCTGAAGAAGAACGTCGGACAAATCTGCATTTTATAGTTGTTGGAGGGGGTCCAACTGGTGTTGAATTTTCTGCTAAGCTTCATGACTATTTCCAAGAAGATTTAGTTAAATTATATCCATCCGTCAAAGATATAGTGAAGATTACACTGATTCAATCAGGAGATCGCATCTTGAACACGTTTGATGAAAGAATTAGTTCATTTGCTGAGCAGAAGTTTGGAAGAGATGGTATAGAAGTACAAACAGGATGTCGAGTTGTCAATGTTGGTGACAAGGAAATTACAGTAAAAGTGAAATCAACAGGAGAGTTTTGTTTTGTACCCCATGGATTGATTGTCTGGTCTACTGGAATTGCAACTCGTCCAGTTGTGAGAGACTTTATGGAACAAATTGGTCAGGCTAAAAGGAATGTCCTGGCGACGGATGAATGGTTGCAAGTGAAAGGATGTGAATCTGTGTATGCTATTGGTGATTGTTCTTCAATAAATCAACGTAAAATCATGGATGATATCTCGGCCATTTTTGAAGCTACAGACAAAGACAACTCTGGTACCTTAACTATTGAAGAATTCAATGATGTGATGGATGATATCATCTTGAGATATCCACAAGTTGAACTCTATATGAAGAGCCAACATCTGCTTGATTTGACTCATCTGTGGAAAGATTCCCAAGGAAATGAAAAACATGAAATAGATATAGAAGGGTTTAAGCTGGCCCTTTGTCATATGGATTCACAGATGAAGAGTCTACCAGCAACTACACAGGTTGCTGCCCAACAGGGTGCATATCTGGCTAAATGTTTTAACCGCATGGATTATTGTGAAGAGCATCCTGAAGGTCCTCTAAGATTCAGAGGATCTGGACGTCATACTTTTCGTCCCTTCCAGTATAAGCATTTAGGGCAATTTGCACATCTGGGTGGAGAGCAGGCAGCTGTAGAACTTCCTGGAGACTGGGTATCTATGGGTCACAACACTCAATGGCTTTGGTATTCTGTATATGCAAGGTAA 1653 0.4077 MKIASFFTKAFHTFPSCSKLVLLCALSGGGVVSYSELQSGSEKPHAPSIDPNEPKKKKLVVLGTGWAGTSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVELVRNIIKKRKGVIKFWEAECLKIDYVNKKVLCRSNIDNNLVGSGEFSLDYDYLVIAIGAQVNTFNTPGVMEHCHFLKEVEDAQKIRMSVIDCFEKAVLPSLSEEERRTNLHFIVVGGGPTGVEFSAKLHDYFQEDLVKLYPSVKDIVKITLIQSGDRILNTFDERISSFAEQKFGRDGIEVQTGCRVVNVGDKEITVKVKSTGEFCFVPHGLIVWSTGIATRPVVRDFMEQIGQAKRNVLATDEWLQVKGCESVYAIGDCSSINQRKIMDDISAIFEATDKDNSGTLTIEEFNDVMDDIILRYPQVELYMKSQHLLDLTHLWKDSQGNEKHEIDIEGFKLALCHMDSQMKSLPATTQVAAQQGAYLAKCFNRMDYCEEHPEGPLRFRGSGRHTFRPFQYKHLGQFAHLGGEQAAVELPGDWVSMGHNTQWLWYSVYAR* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00947 550 SUPERFAMILY EF-hand 334 464 IPR011992 -
Rops7g00947 550 SUPERFAMILY FAD/NAD(P)-binding domain 56 275 IPR036188 -
Rops7g00947 550 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Rops7g00947 550 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Rops7g00947 550 PRINTS FAD-dependent pyridine nucleotide reductase signature 162 180 - -
Rops7g00947 550 PRINTS FAD-dependent pyridine nucleotide reductase signature 223 241 - -
Rops7g00947 550 PRINTS FAD-dependent pyridine nucleotide reductase signature 59 78 - -
Rops7g00947 550 Pfam Pyridine nucleotide-disulphide oxidoreductase 58 381 IPR023753 GO:0016491
Rops7g00947 550 SUPERFAMILY FAD/NAD(P)-binding domain 221 376 IPR036188 -
Rops7g00947 550 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 48 408 - -
Rops7g00947 550 Gene3D - 46 393 - -
Rops7g00947 550 Gene3D - 431 550 - -
Rops7g00947 550 PANTHER NADH DEHYDROGENASE 52 549 IPR045024 GO:0003954|GO:0006116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00947 Rops-Chr7 12537683 12542590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00947 7 549 Chloroplast and Mitochondria Gene Families AT4G21490 62.500 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00947 K03885 - gmx:100793566 893.264