Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00917 ATGGGAAGAGCACCTTGCTGTGACAAGAATGGACTCAAAAAAGGTCCATGGACACCTGAGGAAGATCTCATGCTAATCAACTACATTCAAACTCATGGACCTAGAAATTGGAGAAACCTCCCTAAGAATGCTGGTACCTACAAGTTCCCTTCTTCTCTATGTCTGCAAAGGTGTGGTAAGAGTTGCCGCCTTCGATGGACTAATTACCTTAGGCCCGACATCAGGAGAGGAAGATTCTCCTTTGAAGAAGAAGAAACCATCATTCAGCTCCATAGTGTCTTGGGAAACAAGTGGTCGGCTATAGCGAATCGGTTACCAGGAAGAACTGACAATGAAATAAAGAACTATTGGAACACACACATTAGGAAGAGGCTACTTCGAATGGGAATTGACCCTGTTACTCATGCACCACGCCTTGATCTACTTGACATATCCTCAATTCTCAGGTCAGCGTTAGGTAACCCATCATTTCTGAACCTGCAAGGCTTGTTGGGTGCTCAAGCATTGGTGAACCCGGAGTTGTTAAAGCTAGCTGCCACTGCCACGTTGTTATCTTTGAAGAACGAGAATCTACAACAACAAATCAATGCTGGGAATTGTCAAGTACAAAACCAATTTGGCCCCCCACCAGAGTTTACGGGTCAGTTTCAAACACCAACTCAAAGCAACAACAATGTGAATGGTTTATCAGGCAACAACATGGTAAACATGAGCTGTTCAAGTTCCCCTGAGAATTCAATTCCATCTTCCTATCTTGGGGAGAACTTGATTTCTCAACAATACCAAGTTGATGATTTGCTACAGAACCCGGAATTGTTACATTGCCTAAACGATGCAAACCAAAACATGGGCTATGAATCAGTTCTGTCTACGCCTTTATCAACCCCAACACCGTTAAATTCATCATCTACCCATGTGAATAGCAGCACAGAGGAAGAGAGGGACTCCTATTGCAGCGACATATTCAAGTTCGAAATTCCAGAGAGTTTGGACATTAGTGACTTCTTGTAA 1011 0.4332 MGRAPCCDKNGLKKGPWTPEEDLMLINYIQTHGPRNWRNLPKNAGTYKFPSSLCLQRCGKSCRLRWTNYLRPDIRRGRFSFEEEETIIQLHSVLGNKWSAIANRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDISSILRSALGNPSFLNLQGLLGAQALVNPELLKLAATATLLSLKNENLQQQINAGNCQVQNQFGPPPEFTGQFQTPTQSNNNVNGLSGNNMVNMSCSSSPENSIPSSYLGENLISQQYQVDDLLQNPELLHCLNDANQNMGYESVLSTPLSTPTPLNSSSTHVNSSTEEERDSYCSDIFKFEIPESLDISDFL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00917 336 ProSiteProfiles Myb-like domain profile. 9 70 IPR001005 -
Rops7g00917 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 70 IPR017930 -
Rops7g00917 336 MobiDBLite consensus disorder prediction 289 307 - -
Rops7g00917 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 274 - -
Rops7g00917 336 MobiDBLite consensus disorder prediction 289 312 - -
Rops7g00917 336 Gene3D - 78 125 - -
Rops7g00917 336 SMART sant 75 123 IPR001005 -
Rops7g00917 336 SMART sant 13 72 IPR001005 -
Rops7g00917 336 Gene3D - 13 75 - -
Rops7g00917 336 SUPERFAMILY Homeodomain-like 11 117 IPR009057 -
Rops7g00917 336 FunFam Transcription factor MYB39 78 139 - -
Rops7g00917 336 FunFam MYB-related transcription factor 13 75 - -
Rops7g00917 336 Pfam Myb-like DNA-binding domain 14 70 IPR001005 -
Rops7g00917 336 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Rops7g00917 336 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Rops7g00917 336 CDD SANT 78 121 IPR001005 -
Rops7g00917 336 CDD SANT 16 70 IPR001005 -
Rops7g00917 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00917 Rops-Chr7 12242688 12243990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00917 1 336 MYB Transcription Factor Family AT4G21440 48.525 2.48e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g00917 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00917 K09422 - gmx:100812189 440.654