Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00910 ATGGTGAGATCCCCTTGTTGTGACCAAAATGGACTGAGGAAAGGTGCGTGGACACCCGAAGAAGACAAGAAGTTGATTGCCTATGTTACTAGGTATGGTTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGCAGACTGAGGTGGCTTAACTATCTAAGGCCCAACATTAAAAGAGGGAACTATAGTCAAGAAGAAGAAGATACTATCATCAGACTTCACGAAAAGCTGGGTAATAGATGGTCTGCGATTGCTGCTCATTTGCCAGGGAGAACGGATAATGAGATAAAGAATCACTGGCACACTTCCCTGAAGAAGCGTTTTGAAAACAAATCAACTGGAATTGGAAAAGCCAAAGTGCCCTCCAAGTCAAAGAATCAGTCCCCAATAGAAGAAGCCAAGCAACTTGAGAGAGTGTCAGAGAATAGCAGAGATCCCAATAATCGTACATTGTCACCACAACCATCATCTAGCGGATTCTCCTACATAACAACAGATACCGCAGCAACAGCCACAAATCTTGAAAATTCGGTTCTGGAAGATGATGACCTTCCTTTTCTGGATGCATACACGGAGGCAGTGAGTTCAAATTTCTGGACAGAGCCATATCTGATTGACAGTTCCTATGTCCCTCCCTGTGAAGCTGAATATTTTAGTCCTGTGTGCGATGTAGAACTTTGGAGCCATAATAATTTGTACCATGAATGTGAGGGTTTATTCTATTGA 750 0.4373 MVRSPCCDQNGLRKGAWTPEEDKKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGNYSQEEEDTIIRLHEKLGNRWSAIAAHLPGRTDNEIKNHWHTSLKKRFENKSTGIGKAKVPSKSKNQSPIEEAKQLERVSENSRDPNNRTLSPQPSSSGFSYITTDTAATATNLENSVLEDDDLPFLDAYTEAVSSNFWTEPYLIDSSYVPPCEAEYFSPVCDVELWSHNNLYHECEGLFY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00910 249 MobiDBLite consensus disorder prediction 138 152 - -
Rops7g00910 249 CDD SANT 69 112 IPR001005 -
Rops7g00910 249 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops7g00910 249 CDD SANT 16 61 IPR001005 -
Rops7g00910 249 SMART sant 66 114 IPR001005 -
Rops7g00910 249 SMART sant 13 63 IPR001005 -
Rops7g00910 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 176 - -
Rops7g00910 249 Gene3D - 14 66 - -
Rops7g00910 249 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops7g00910 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops7g00910 249 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops7g00910 249 MobiDBLite consensus disorder prediction 153 169 - -
Rops7g00910 249 MobiDBLite consensus disorder prediction 119 169 - -
Rops7g00910 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops7g00910 249 FunFam MYB-related transcription factor 13 66 - -
Rops7g00910 249 Gene3D - 69 145 - -
Rops7g00910 249 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops7g00910 249 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00910 Rops-Chr7 12166992 12168076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00910 1 216 MYB Transcription Factor Family AT2G31180 45.833 3.64e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g00910 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00910 K09422 - gmx:100815765 309.301