Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00906 ATGAGGAAAAACTGCGAGCTTTGTAAGGTTCCGGCGAGAACCTTCTGTGAGTCCGACCAGGCAAGCTTATGTTGGGACTGCGATTCCGAGGTACACGGTGCCAACTTCTTGGTCGCACGACACACCAGAACCCTTCTCTGTCACACGTGCCAGTCTCTCACGCCGTGGAAGGCCTCCGGCGCTAGGCTCGGAAACACACTCTCGTTATGCGACACGTGTGCCGGCGGAACGAAACTCGACGCCGATGAAGGACGAGAGAGTGAAGGAGACAATGACGACGACATAGACACCGATGATGATTATGATGATGAAGATGACGATGATGAGGTTGAGGTTGAGGACGAGGCTGCCGGTGATGAGGATGGTGATAACCAGGTTGTCCCTTGGTCATCGACGGCGCCACCACCACCACCACCACCGAGTTCTTCCAGTAGCGAAGAGTCGGTTAGCAGGTGCAACAACCTCGATGAAGATATAACTCAGTCAGTTACAACAGTTTCGTTGAAACGACGTCGTGAGGAGGATCAAGATTTTCAGGGTTCGAATAATTGGGCATATCAAAGGAGGTGCGGTGCAAGGTGGAGGGAGGAGGTTAATTTGTTAGGGCGCGACGGAGAAACGCCGTCTAAGGTGTCGATGCGGCGTTTGAGCGACGGAGAAGATAATACACCGCCATCCTCAAACAGTTGCTGTAATGGTAGAACCTCCGAAGACGTTTGA 720 0.5278 MRKNCELCKVPARTFCESDQASLCWDCDSEVHGANFLVARHTRTLLCHTCQSLTPWKASGARLGNTLSLCDTCAGGTKLDADEGRESEGDNDDDIDTDDDYDDEDDDDEVEVEDEAAGDEDGDNQVVPWSSTAPPPPPPPSSSSSEESVSRCNNLDEDITQSVTTVSLKRRREEDQDFQGSNNWAYQRRCGARWREEVNLLGRDGETPSKVSMRRLSDGEDNTPPSSNSCCNGRTSEDV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00906 239 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 185 - -
Rops7g00906 239 MobiDBLite consensus disorder prediction 201 239 - -
Rops7g00906 239 MobiDBLite consensus disorder prediction 79 184 - -
Rops7g00906 239 SMART bboxneu5 1 46 IPR000315 GO:0008270
Rops7g00906 239 MobiDBLite consensus disorder prediction 144 166 - -
Rops7g00906 239 MobiDBLite consensus disorder prediction 201 217 - -
Rops7g00906 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Rops7g00906 239 CDD Bbox1_BBX-like 5 46 - -
Rops7g00906 239 MobiDBLite consensus disorder prediction 86 121 - -
Rops7g00906 239 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Rops7g00906 239 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00906 Rops-Chr7 12108038 12109330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00906 1 137 C2C2-CO-like Transcription Factor Family AT4G27310 45.122 1.94e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops7g00906 zf-B_box 7.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00906 - - mtr:11417549 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00906 7 12108038 12109330 Rops7g00906 7 12108038 12109330 ECH
Rops7g00906 7 12108038 12109330 Rops3g01322 3 19098780 19100308 PCT