Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00899 ATGCACATGTTAGCAAAAGCACATGATAAAGGGGATGGATCCAAGTCCCTGGCTAAGAAACTGGCAAGATGGAAAGAATATAATGCACAGCTTGATTCCTGCAATGATGTGGATAAGCCAGTTCGAAAAGTTCCTGCCAAGGGATCAAAGAAGGGGTGTATGAAAGGGAAAGGAGGGCCTGAAAATTCAAGATGTAACTACAGAGGTGTTAGACAAAGGACCTGGGGGAAATGGGTTGCTGAAATCAGAGAACCAAATAGAGGGAATAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTTTAGCTGCTTTTGCATATGATGAAGCAGCAAGGGCAATGTATGGTTCTTGTGCCCGCCTCAACTTTCCTAATGTTTCAGCTTCAAGTTTCTCTGAGGAATCTTCAAAAGATTCTCCTGTTGCAAATCACTCTGGTTCACCAATGGCAGTATCAGCAATTGCTGAGTCCATGATATCACCAAGTAACTCTGGGGTAGGTACAGAAGGGGATATTGATATGGAACCCATTTCCTTATCCTTAAGTGTAAAACATCAGAATGAGGAAAGTGAATCAGGGATCAATTCATCCCCCCCTTCTTGCTCATGA 606 0.4356 MHMLAKAHDKGDGSKSLAKKLARWKEYNAQLDSCNDVDKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAILAAFAYDEAARAMYGSCARLNFPNVSASSFSEESSKDSPVANHSGSPMAVSAIAESMISPSNSGVGTEGDIDMEPISLSLSVKHQNEESESGINSSPPSCS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00899 201 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Rops7g00899 201 MobiDBLite consensus disorder prediction 179 201 - -
Rops7g00899 201 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Rops7g00899 201 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Rops7g00899 201 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Rops7g00899 201 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Rops7g00899 201 MobiDBLite consensus disorder prediction 155 201 - -
Rops7g00899 201 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Rops7g00899 201 MobiDBLite consensus disorder prediction 40 61 - -
Rops7g00899 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 183 - -
Rops7g00899 201 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Rops7g00899 201 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Rops7g00899 201 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00899 Rops-Chr7 11977905 11979513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00899 10 177 AP2-EREBP Transcription Factor Family AT2G40340 48.837 1.28e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops7g00899 AP2 5.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00899 - - gmx:100527471 338.961