Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00894 ATGCACGTCACGTCCTCACATAGCCTCATGAAAGCTGAATTAAAGGGAACTTCCATTTCCTTTCAAAACCCTACTACTCTCTTCAACACACCCCACAATCCTCTTTCAGGAGCACTTAAAGGGTGTCTTGGAAGCCTTGATGGAGCTTGTATTGAGAAGCTCTTACTCCACTGTGCTAGTGCTTTGGAGAGCAACGATATCACCTTGGCTCAACAAGTCATGTGGGTCCTCAACAACGTTGCTTCTCCCGTTGGTGACACTAACCAAAGGCTCACCTCATGGTTTCTGAGGGCATTAATCTCTAGGGCTTCAAGAATTTGCCCAACTGCCATGAATTTCACGGGAAGCAACACCATCCAAAGGAGGTTGATGACCGTGACTGAGTTAGCAGGGTATGTGGATCTAATTCCCTGGCATAGGTTTGGTTTTTGTGCATCAAATAATGAAATTTTCAAAGCAATTATGGGGTTCCAAAGGGTACATATTCTAGATTTTAGCATCACCCCTTGTATGCAGTGGCCTACTTTTATAGATGCGTTAGCTAAAAGGCCTGAAGGACCACCTTCACTTAGAATCACTGTGCCATCTTTTAGGCCACCGGTCCCTCCCTTGGTGAATATATCAATACATGAAGTTGGTCTACGTTTAGGTAATTTCGCCAAGTTCAGGGATGTCCCTTTAGAATTCAATGTTATTGGAAATACAGATCCATTAACATCAGCAGAATTGAGCTATGAATCAACAAGTTTTCATTTTGAATCTTTGTTAAGTCTCTTGAATCCTACTGTGCTAAACCTTAGAGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTACGTTATTTGTCTGATGATAGAAAGGGAAGCCGTCAAAATCTTTCTCTTAGGGATGCTTTTCTGAATCTAGTTAAAGGTCTTAACCCCCAGATTTTGCTCTTGGTTGATGAGGACTGTGATCTTAGTGCATCCAGTCTCTCATCAAGAATTACCGCTTGTTTCAACCATCTATGGATACCCTTTGATGCATTGGACACTTTTTTGCCTAAAGATAGTTGTCAGAGGACAGAGTTTGAATCTGACATAGGACAGAAAATTGAGAACATCATAAGCTTTGAAGGGCATCAAAGAATAGAGAGATTAGAGTCTGGGATGCAAATGTCCCAAAGAATGAAAAATGCAGGTTACTTAAGTCTTCCACTTTGTGATGAAACTGTTAAGGAAGTTAAAGCTCTGCTAGATGAGCATGCTAGTGGATGGGGGATGAAAAGGGAAGAAAATATGTTAGTTCTCACATGGAAAGGAAACAGCTGTGTGTTTGTGACAGCTTGGGTTCCCAGTGAAATGAGGGATCATCACATCAGTATGGACGCAAGTGTGTCTTAA 1386 0.4156 MHVTSSHSLMKAELKGTSISFQNPTTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMNFTGSNTIQRRLMTVTELAGYVDLIPWHRFGFCASNNEIFKAIMGFQRVHILDFSITPCMQWPTFIDALAKRPEGPPSLRITVPSFRPPVPPLVNISIHEVGLRLGNFAKFRDVPLEFNVIGNTDPLTSAELSYESTSFHFESLLSLLNPTVLNLREDEALVINCQNWLRYLSDDRKGSRQNLSLRDAFLNLVKGLNPQILLLVDEDCDLSASSLSSRITACFNHLWIPFDALDTFLPKDSCQRTEFESDIGQKIENIISFEGHQRIERLESGMQMSQRMKNAGYLSLPLCDETVKEVKALLDEHASGWGMKREENMLVLTWKGNSCVFVTAWVPSEMRDHHISMDASVS* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00894 461 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
Rops7g00894 461 Pfam GRAS domain family 52 444 IPR005202 -
Rops7g00894 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 440 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00894 Rops-Chr7 11924186 11925571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00894 25 446 GRAS Transcription Factor Family AT3G49950 44.419 1.23e-116 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops7g00894 GRAS 1.4e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00894 - - gmx:100802093 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00894 7 11924186 11925571 Rops7g00894 7 11924186 11925571 ECH