Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00883 ATGGACAATGATTCCTCAGGTGCCTCTTGTTGGCTCTATGATTATGGCTTTGATATCTCTGTTGCTGGAGCTGACTTCATGGCTGCAGACTCTGCTGGTTTCAACTGGGTGCCTCAGAGTAACTTAACCTTCAAGGATCCTTCCAATATGAGTTGCAGCTTGGAAATGGATTACTCACTGGATTCAACTGTCCTTGAAAATATCCCTTCAAAGAGGTTAAGGTCTGAATCATATGCACCTGGCTCCAAGGCATGTCGAGAGAAATTGCGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCTATCTTGGAGCCTGGTACTCTGCCCAAAACAGACAAGGTTGCTACACTAAGTGATGCGGTTCGAATGGTCACCCAATTAAGAAATGAAGCTCAGAAGCTGAAGGAAATGAATAATGAATTAGTTGCAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGTTGAAGCTCAAAAAAGAAAAGTTGGAGCAACAGGTCAAATTGACAAATGCACAGCCTAACTTCCTCCCTCATGCCCCTGCTGCTGCTGCTGCTGCTGCTGCTAAGGGGCAAGTTGCTAGCCACAAGCTGATACCTTTCATTGGTTACCCTGGAATTGCCATGTGGCAGTTTATGCCTCCTGCTACAGTTGATACATCAAAGGATCATCTCCTTCGACCTCCTGTTGCTTAA 720 0.4431 MDNDSSGASCWLYDYGFDISVAGADFMAADSAGFNWVPQSNLTFKDPSNMSCSLEMDYSLDSTVLENIPSKRLRSESYAPGSKACREKLRRDKLNERFLELSSILEPGTLPKTDKVATLSDAVRMVTQLRNEAQKLKEMNNELVAKVKELKAEKNELRDEKNRLKLKKEKLEQQVKLTNAQPNFLPHAPAAAAAAAAKGQVASHKLIPFIGYPGIAMWQFMPPATVDTSKDHLLRPPVA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00883 239 CDD bHLH_AtILR3_like 83 158 - -
Rops7g00883 239 Coils Coil 119 181 - -
Rops7g00883 239 Pfam Helix-loop-helix DNA-binding domain 82 129 IPR011598 GO:0046983
Rops7g00883 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 143 IPR036638 GO:0046983
Rops7g00883 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 129 IPR011598 GO:0046983
Rops7g00883 239 Gene3D - 82 159 IPR036638 GO:0046983
Rops7g00883 239 SMART finulus 84 135 IPR011598 GO:0046983
Rops7g00883 239 PANTHER BHLH TRANSCRIPTION FACTOR 6 239 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00883 Rops-Chr7 11816752 11819301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00883 33 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 58.571 1.29e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g00883 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00883 - - gmx:100806838 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00883 7 11816752 11819301 Rops7g00883 7 11816752 11819301 ECH