Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00877 ATGGAAGAAGCTCTATGTGAGTTTTGTGGGGTTGCAAGAGCTGTGGTTTATTGCCAACCAGATTCTGCACGTCTCTGCTTTGATTGTGATGGATATGTACATTCTGCAAATTCTTTGTCTAGAAGGCATCCACGTTCTCTTCTCTGTGATAGGTGCAATTTTGATGCAGCAGTTATCCGTTGCATGGATCATAAATGGTCCATGTGTCAAGTTTGTGATTGGAATACAAATGAATGTTTTGCATTGGGACATAAGCGTGAGGCATTGAATGTTTATTCCGGTTGTCCCTCTTTGGATGAGTTTTCTAGGATTTGGTCACATGTGTTTGATGCTAAAGATGATAGCTGTACTAATAGCAAGCGTTTGGAGCAACCTGATAATGGTGGTTCCTCAGGTTTGGGGAGTGACAAATTGGATGAAGTCGTAGAACCATGTGCTAGATTTGAACCTTTGATGGGGCAATGTCCTATCATTCCATCAAATCCAAACTTCAATCAGTACTGCAAAGATCAAGCATTTTTCTTTCCTCATGATTCAAACCAGCCAAAGGGATGTCCTAATTTCAAGGATCAAGGAACTCATGATGGGAATGGTATCTGTGAAAGTCTCAATGTGGACAATGTTCAATTAAGCTTTGAAGGTGCTGATGAAATATTTGACTGCTCTCAAGGTGCCACAAGATACCACCTAGAAGATGGAGGATTGGACTGTCTATTAATGGATAAAAACATATCAGTCACAGAATCTAGTAGTAGGCTTATTGAGACTGCCATGGAGGCATCATCAATAGTCCAAAAAGATTGTGTGGCTTTTCCATCATCTGGTGCTGGTGGGTCCACTAGTGTGATGCTGCAGGCCATCAACAGCAATGCAAATTATGCACTTATGCCTCCTAGCTGCAACAGAAACATCAATCTGGGATTTCCTCAGGGTCAAATTCCTACAAGCATACCAATTCAATTACCCAACATTACTGGTGAAAATAATACTACTGAATATCAAGACTGTGGGTTACCACCAGTGTTTCTGCCAGGTGAATCCCCCTGGGAACCAAATCTGGAGGGTACATGCCCACAGGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATGTGATTATGATCCTCTTGTGACAAGGGACACCTAA 1254 0.4139 MEEALCEFCGVARAVVYCQPDSARLCFDCDGYVHSANSLSRRHPRSLLCDRCNFDAAVIRCMDHKWSMCQVCDWNTNECFALGHKREALNVYSGCPSLDEFSRIWSHVFDAKDDSCTNSKRLEQPDNGGSSGLGSDKLDEVVEPCARFEPLMGQCPIIPSNPNFNQYCKDQAFFFPHDSNQPKGCPNFKDQGTHDGNGICESLNVDNVQLSFEGADEIFDCSQGATRYHLEDGGLDCLLMDKNISVTESSSRLIETAMEASSIVQKDCVAFPSSGAGGSTSVMLQAINSNANYALMPPSCNRNINLGFPQGQIPTSIPIQLPNITGENNTTEYQDCGLPPVFLPGESPWEPNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEACDYDPLVTRDT* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00877 417 CDD Bbox1_BBX-like 5 48 - -
Rops7g00877 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 406 - -
Rops7g00877 417 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Rops7g00877 417 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Rops7g00877 417 SMART bboxneu5 1 48 IPR000315 GO:0008270
Rops7g00877 417 Pfam CCT motif 361 403 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00877 Rops-Chr7 11764649 11766763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00877 3 411 C2C2-CO-like Transcription Factor Family AT3G21880 40.714 1.50e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops7g00877 CCT 1.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00877 - - gmx:100804738 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00877 7 11764649 11766763 Rops7g00877 7 11764649 11766763 ECH