Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00872 ATGGAGCAACCCATTTGCCCTCTCGACTCGCGTTGTGCCACTGAAATCTCTGCTCTTCTCTCTCCTCCCTCACCCCTTCAAGTTCAGGAATATTATCATACCCTCTTGTCTTCAAGGCAGTGCAGTGGCATCACAGTCAAACAAGATGGAAACTTTGAAAAGGGGGTATATGCTGCCATGGATTTCAAAGAGGGGGAACTAGTTCTGAAGGATCACATGCTAGTGGGGGCTCAACACTCTTTCAACAAGATTGATTGTTTTGTGTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAACTTCAAATTGGAAGGAGGCTTTACTTGCAAGAATTAAGGGCCAATAAGAGCCATGGTTGTGATGTGGGAAACTCTTCAGAAAACTGCCATGAAGTGGATTCATCTGATGAAGAGGAGAGCACTCAGCAATGTGCTTCTGGATCTGGTAGTTCCAAAACTAAAGTTCCTCTTCCCGAAGATGTTGTGGAATCATTAATGAATGGCCAATTGAAATTGCCTTTCTCTGAGGAGTTCTCCTTGCTGCCGGCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTACTATTGCAGCACATCGTGTGCAGAGTCTGATTGGGAATACTCCCATTCTTTACTCTGCACTGGCGAGAGTTCTGATCCAGCACATAGGGAGGCACTCCTTAAATTTATCAAACATGCTAATGAAACAAATGATATTTTCCTCCTTGCTGCAAAGGCTATTTCTTCTACCATATTAAGGTACCACAAGTTAAAAACAAATTGTCTTAAAGAGCAAGTGAAATATGATACATCCTGTGTTTCAAATCTCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAAAAGGTGGTGGGAATGCATTGCATTGCCAGATGATATTGATTCTTCTGATGAAGCTTCATTCAGGATGCAAATAAAAGAGTTGGCATTTGAGTCACTCCAACTTCTTAAGACAGCTATATTTGACAAGGAATGTGAGCCATTGTTCTCCCTTGAAATCTATGGACATATCATTGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATATGACAGGTCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTGGACGCTCTTGGTGAAGACTATTTTATTTGTTGCCAAGGAACTGCATTTTTTCCGTTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAGAGATGGCCAAGCAACAATAATTGCACTAAGGTCTATTTGTAAAGGAGAAGAGATAACTATCTCATATGTTGATGAGGACCTTCCATTTGAAGAGAGACAGGCATCCCTTGCAGATTATGGTTTTAGATGCAGGTGTCCAAAGTGCATTGAAGAAGAGCCATAA 1455 0.4151 MEQPICPLDSRCATEISALLSPPSPLQVQEYYHTLLSSRQCSGITVKQDGNFEKGVYAAMDFKEGELVLKDHMLVGAQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQELRANKSHGCDVGNSSENCHEVDSSDEEESTQQCASGSGSSKTKVPLPEDVVESLMNGQLKLPFSEEFSLLPAVPCPGGCGEAYYCSTSCAESDWEYSHSLLCTGESSDPAHREALLKFIKHANETNDIFLLAAKAISSTILRYHKLKTNCLKEQVKYDTSCVSNLSLLLEAWRPISMGHKKRWWECIALPDDIDSSDEASFRMQIKELAFESLQLLKTAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDMTGPDKEEAEKITQPILDALGEDYFICCQGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRSICKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEEP* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00872 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 15 483 IPR044237 GO:0008168
Rops7g00872 484 SUPERFAMILY SET domain 42 477 IPR046341 -
Rops7g00872 484 CDD SET_SMYD 393 479 - -
Rops7g00872 484 SUPERFAMILY HIT/MYND zinc finger-like 188 214 - -
Rops7g00872 484 Pfam MYND finger 185 213 IPR002893 -
Rops7g00872 484 Gene3D SET domain 380 483 IPR046341 -
Rops7g00872 484 MobiDBLite consensus disorder prediction 118 155 - -
Rops7g00872 484 MobiDBLite consensus disorder prediction 139 153 - -
Rops7g00872 484 ProSiteProfiles SET domain profile. 42 454 IPR001214 GO:0005515
Rops7g00872 484 Pfam SET domain 55 453 IPR001214 GO:0005515
Rops7g00872 484 Gene3D - 110 218 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops7g00872 SET 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00872 - - gmx:100803651 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00872 7 11714454 11720190 Rops7g00872 7 11714454 11720190 ECH