Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00868 ATGAACGACCTCCTTAGTGATTCGTTTGTTAGTGAGGCTAATCATGGTCAGCCTTCTAGACAAAGTGATATTGAAATGGGAATGCAGGTTCCAAGAAGCAATTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCAAGAGGTTGACAAACAGATTGATAAGGTGTCTGGGCTACTTCAAAAGCTAAAGGCAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTTTAAAGATTGCACATGGTGTCAAAGCAAAAATAGAAGCTATAAACAGAGATAACCTAAACAATAGACAAAAGCCTGGCTGTGAGAAGGGAACAGGTATTGACAGAGCAAGGATGAATATGACAAATGCCGTGACTAAAAAGTTCAGGGATCTCATGACAGAGTTTCAGACTCTTAGACAGAAAATACAAGATGAATATCGTGAGGTTGTGGAAAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGCAGGCAATTCTAGAAGCAGGCCGAGGACAGGTTGTAAACACAGTAGAAGAAATCCAGGAGAGACATGATGCTGTGAAAGAAATTGAGAAAAAACTTCTTGATTTGCATCAGATTTACCTTGACATGGCCGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATTGAAAGTCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAATGCTAAGAAACTCCAGAAGAACTCTCGAAAATGGATGTGCATTGCCATCATTATATTGTTGATCATAGTAGCTATTATAGTTGTTGGTGTCATCCAACCTTGGAAGAATAAGGGTGCTTGA 930 0.3968 MNDLLSDSFVSEANHGQPSRQSDIEMGMQVPRSNSDMGMEAFNKQIQEVDKQIDKVSGLLQKLKAANEESKAVTKASAMKAIKKRMEKDIDEVLKIAHGVKAKIEAINRDNLNNRQKPGCEKGTGIDRARMNMTNAVTKKFRDLMTEFQTLRQKIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQQAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQNAKKLQKNSRKWMCIAIIILLIIVAIIVVGVIQPWKNKGA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00868 309 PANTHER SYNTAXIN 38 290 IPR045242 -
Rops7g00868 309 CDD SynN 39 196 IPR006011 GO:0016020
Rops7g00868 309 Pfam SNARE domain 245 297 IPR000727 -
Rops7g00868 309 Coils Coil 46 69 - -
Rops7g00868 309 Gene3D - 34 163 - -
Rops7g00868 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Rops7g00868 309 MobiDBLite consensus disorder prediction 1 26 - -
Rops7g00868 309 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Rops7g00868 309 Gene3D - 202 302 - -
Rops7g00868 309 FunFam Syntaxin 132 34 163 - -
Rops7g00868 309 CDD SNARE_syntaxin1-like 208 269 - -
Rops7g00868 309 SMART tSNARE_6 204 271 IPR000727 -
Rops7g00868 309 SMART SynN_4 34 160 IPR006011 GO:0016020
Rops7g00868 309 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Rops7g00868 309 FunFam Syntaxin 132 202 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00868 Rops-Chr7 11657070 11660769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00868 1 307 SNARE and Associated Proteins AT3G03800 61.238 3.99e-125 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00868 K08486 - gmx:100800991 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00868 7 11657070 11660769 Rops7g00868 7 11657070 11660769 ECH