Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00864 ATGCCAGCTGGTATTATGATTCCGGCGAGAAACATGCCCTCGATGATTGGAAGGAACAGCAACAACGTTGGTGGGTTTGGATTATCTTCAGGGCTGTCTCTTGGTCAGCCAAACCTAATGGAAGGTGGTCACCAACCGCACCCATTCCCACCAGACATGGCTCAGAACACTTCAGAGAGTGATGTCCCTAGAATCCGAGAAGATGAGTTTGACAGTGCCACCAAGTCAGGCAGTGAAAACCAGGAAGGTGCCTCAGGAGAAGAACAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGACACACACAGCATCAGATCCAGGAAATGGAAGCCTTTTTTAAGGAGTGTCCACACCCTGATGACAAGCAGAGGAAGGAACTGAGCCGAGAGTTAGGGTTAGAGCCATTACAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAACACGAGCGCCATGAGAACACACAGCTGAGAACTGAGAATGAGAAGCTTCGAGCTGATAACATGAGATTCAGAGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGGCTTGAAAATGCCCGGTTAAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCCAAATATGTTGGCAAGCCTGTGGTGAGCTATCCACTTCTTTCTCCTTCATCTGTTCCTCCCCGTCCTCTAGAACTTGGCATTGGTGGCTTTGGTGGCCAGCCAGGGATTGGTGGGGATATGTACGGTGCTGGAGATCTTCTTAGGTCAATCAGTGGACCAACTGAAGCTGATAAACCAATAATAATAGAGCTTGCTGTTGCAGCTATGGAGGAACTCATCGGAATGGCACAAATGGGTGAACCTCTTTGGTTGACTACCCTTGATGGCACCACCACTGTACTCAATGAGGATGAATACATCAGATCCTTTCCCCGAGGAATTGGTCCAAAGCCTGCTGGCTTCAAATGTGAAGCTTCACGAGAAACTGCTGTTGTTATCATGAACCATGTTAACCTTGTCGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGTATTGTCTCAAGAGCGATGACTTTGGAAGTGCTATCAACTGGGGTGGCGGGGAACTACAATGGTGCCTTGCAAGTGATGACAGCAGAATTACAAGTACCTTCACCACTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAGCATGGTGATGGGACTTGGGCAGTAGTGGATGTTTCCTTGGATAATTTGCGCCCTAGTCCTTCAGCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACCGTAGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTGAAACTAGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCTACTGCTCATACATGGACAACACTCTCTGGGACTGGTGCTGATGATGTAAGGGTCATGACCAGGAAGAGTGTAGATGACCCAGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCCAAAAGAGTTTTTGAATTCCTCCGTGATGAGAACTCCAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGCTGTCCAAGAAATGGCACATATTGCAAATGGAAGAGATACTGGAAATTGTGTCTCCCTACTTCGAGTGAATAGTGCCAATTCAAGCCAAAGCAACATGTTGATCTTACAAGAAAGTTGCACAGACTCTACGGGCTCTTTTGTTATATATGCTCCAGTAGATATTGTTGCAATGAATGTAGTTCTAAATGGAGGGGACCCAGATTATGTAGCCCTTCTCCCTTCAGGATTCGCTATACTCCCAGATGGGACCACATCACATGGAGGTGGCATTGGTGAAACTGGCCATGGTGGATCTTTATTGACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACGGCGAAACTTTCTCTTGGATCTGTTGCTACGGTTAATAATCTTATTGCGTGTACTGTTGAGAGAATTAAGGCTTCCTTATCTGGTGAAGTTGCTTGA 2298 0.4591 MPAGIMIPARNMPSMIGRNSNNVGGFGLSSGLSLGQPNLMEGGHQPHPFPPDMAQNTSESDVPRIREDEFDSATKSGSENQEGASGEEQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGFGGQPGIGGDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGAVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00864 765 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Rops7g00864 765 FunFam Homeobox-leucine zipper protein GLABRA 2 286 505 - -
Rops7g00864 765 MobiDBLite consensus disorder prediction 61 75 - -
Rops7g00864 765 CDD homeodomain 96 154 IPR001356 GO:0003677
Rops7g00864 765 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Rops7g00864 765 ProSiteProfiles START domain profile. 277 509 IPR002913 GO:0008289
Rops7g00864 765 FunFam Homeobox-leucine zipper protein HDG1 82 169 - -
Rops7g00864 765 SUPERFAMILY Homeodomain-like 86 153 IPR009057 -
Rops7g00864 765 Coils Coil 159 179 - -
Rops7g00864 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 94 760 IPR042160 -
Rops7g00864 765 SMART HOX_1 94 157 IPR001356 GO:0003677
Rops7g00864 765 SUPERFAMILY Bet v1-like 277 508 - -
Rops7g00864 765 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Rops7g00864 765 SUPERFAMILY Bet v1-like 526 757 - -
Rops7g00864 765 MobiDBLite consensus disorder prediction 34 104 - -
Rops7g00864 765 Pfam START domain 287 506 IPR002913 GO:0008289
Rops7g00864 765 CDD START_ArGLABRA2_like 281 505 - -
Rops7g00864 765 Gene3D - 81 170 - -
Rops7g00864 765 SMART START_1 286 506 IPR002913 GO:0008289
Rops7g00864 765 Gene3D - 336 503 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00864 Rops-Chr7 11588232 11594689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00864 65 765 Homeobox Transcription Factor Family AT1G05230 82.128 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops7g00864 START 1.6e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00864 K09338 - gmx:100797992 1380.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00864 7 11588232 11594689 Rops7g00864 7 11588232 11594689 ECH
Rops7g00864 7 11588232 11594689 Rops3g01248 3 17914221 17931916 PCT