Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00863 ATGGAGGTGGTCTGGGTCAAGGGGTTGTTCCTGTTGTTTTTCTGCTTGTGGATTCCCAAGGAAGTGGTGGGAAGGACAGGAACTACCATTGTGAACTCTACTGTTTCTTCAAGACCAAGGGTTTTGAGAATTGGAGCACTGTTTACTGTTGATTCTTTCATTGGAAGATCGGCTAAACCTGGAATCTTGGCTGCAATTGAAGATGTTAATGCTAATAAGAGCATTCTCCCTGGCATTAAACTGGAAGTTAGTTTACATGACAACAAATGCAGTGGGTTTGTTGGAACAGTGGGAGCTTTGCAGTTGATGGAGAATGAAGTGGTTGCTGTTATTGGTCCACTGTCTTCTGGAATAGCCCATGTCATCTCTCATGTTGTTAATGAACTCCATGTGCCTCTTCTTTCATTTGGGGCAACAGACCCATCTCTATCTTCCATGCAGTACCCATATTTTGTCCGCACCACCCACAGTGACTATTTTCAGATGTATGCAATTGCAGACTTGGTTGATTATTATAGGTGGAGAGAGGTAATTGCCATTTTTGTAGATGATGATAATGGAAGGAATGGAATTTCAGTACTTGGAGATGCTCTTGCGAAGAAACGTGCTAAGATCTCTTACAAGGCTGCATTCCCTCCTGGAGCCTCCAAGAGTGATATCAGTGACTTGTTAAATGGAGTAAACTTAATGGAATCAAGGGTCTATGTTCTGCATGTTAATCCTGATTCTGGTTTGTCAATTTTTTCTATTGCTAAGAAGCTTGGAATGATGACAAGTGGCTATGTATGGATAGCAACAGATTGGCTTCCTTCAGTGTTGGATTCAATGGAGCCAGTTGACACTAACACTCTAAATCTCCTACAAGGGGTTGTAGCATTGCGCCATCACACTCCTAATACCAATATCAAAAAGAATCTTTTCACTAGGTTGAAGAACCAAAAAGGCATGGAGAATGCAAGCTTCAATTCTTATGCATTATATGCATATGATTCTGTTTGGTTAGCAGCCTATGCTCTTGATGTTTATCTTAAAGAAGGTGGAAACATATCTTTCTCTTCTGACCCTAAGTTGCGTGACACAAATGGAAGCATGTTGCATTTATCATCACTTCGTGTTTTCGATGGTGGTTCATTGTTTCTCCCTACAATTTTGAGAATGAATTTCACTGGTTTGAGTGGTCAAATTCAGTTTGATATGGACAAGAATCTAATTCATCCTGCATATGATATCTTGAATATTGGTGAGTTTGGATCCCGGAGAATTGGTTACTGGTCTAATTACTCTGGTCTATCAGTTATAGCTCCAGAAATTTTATATAAGAAACCACCTAACATTTCCACAAGCAATCAGAAACTGTACAGTGTTGTATGGCCTGGAGAAACTATAGCAACACCAAGAGGGTGGGTATTCCCTAACAATGGAAAGCCACTAAGAATAGCAGTGCCTCACCGAATAAGCTACTTGGAGTTTGTTGCTAAAGATAAGAACCCTCCAGGAGTAAGAGGCTTTTGCATTGATGTATTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTCCCACGGCAATATATGTTATATGGAGACGGCCATAGAAATCCCAGTTACAGTGACCTTGTCAATCAGGTTGCACAAAATAACTATGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGGACAAGGATTTTGGATTTCACTCAACCTTTCATGGAATCAGGGTTGGTGGTTGTTGTTCCTGTCAAGGAGACCAAATCAAGCCCATGGTCTTTCCTCAAGCCATTCACAGCTCCAATGTGGTGTGTTACTGGTGGCTTCTTTCTTTTTGTGGGAGCTGTTATATGGATTCTTGAGCACCGGCACAATCCAGAGTTCCGTGGTCGACCAAAGAAACAAATTATGACAATCTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGGAGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATCATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTGATAGATGAACTCAATATACAAGAATCTAGGATAGTTACATTGAAAGATCAGCAGGCATATGTTGATGCCCTTAATCGTGGACCAAAAGGAGGAGGGGTTGTTGCCATTGTTGATGAGCTTCCTTATATTGAGCTGCTCATGTCCAATACCAACTGTAAGTTCAGAACGGTGGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGATATGTCAACTGCCATTCTTCAACTCTCTGAGAATGGTGACCTGCAAAAGATCCATGACAAGTGGCTTTTAAAACATGAATGTAGTACACAACTTGATGATGCTGATTCAAATAAACTCTCTCTGAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTTTCCTTGCTTTGATTGCATTCTCTGTTAGAGTGTTTTGTCAATACATGAAATTCAGCCCTGGCCCTGAGCAAGCTGATGAGGAAATTCAACCAGTAAGGCGTAAACGGACTATTAGAACTCCAAGCTTCAAGGACTTGATTGAATTTGTGGATAAGAGAGAGAGAGAAATCAAAGAGATACTTAGGCAGAAGAGTAATAAAAGGAGACGCAGCCAGAGCTTAGATGGCCAATCCACCAGTTCACCTTCCTAA 2805 0.4132 MEVVWVKGLFLLFFCLWIPKEVVGRTGTTIVNSTVSSRPRVLRIGALFTVDSFIGRSAKPGILAAIEDVNANKSILPGIKLEVSLHDNKCSGFVGTVGALQLMENEVVAVIGPLSSGIAHVISHVVNELHVPLLSFGATDPSLSSMQYPYFVRTTHSDYFQMYAIADLVDYYRWREVIAIFVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGASKSDISDLLNGVNLMESRVYVLHVNPDSGLSIFSIAKKLGMMTSGYVWIATDWLPSVLDSMEPVDTNTLNLLQGVVALRHHTPNTNIKKNLFTRLKNQKGMENASFNSYALYAYDSVWLAAYALDVYLKEGGNISFSSDPKLRDTNGSMLHLSSLRVFDGGSLFLPTILRMNFTGLSGQIQFDMDKNLIHPAYDILNIGEFGSRRIGYWSNYSGLSVIAPEILYKKPPNISTSNQKLYSVVWPGETIATPRGWVFPNNGKPLRIAVPHRISYLEFVAKDKNPPGVRGFCIDVFEAAINLLPYPVPRQYMLYGDGHRNPSYSDLVNQVAQNNYDAAVGDVTIVPNRTRILDFTQPFMESGLVVVVPVKETKSSPWSFLKPFTAPMWCVTGGFFLFVGAVIWILEHRHNPEFRGRPKKQIMTIFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARKYLIDELNIQESRIVTLKDQQAYVDALNRGPKGGGVVAIVDELPYIELLMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKHECSTQLDDADSNKLSLSSFWGLFLICGIACFLALIAFSVRVFCQYMKFSPGPEQADEEIQPVRRKRTIRTPSFKDLIEFVDKREREIKEILRQKSNKRRRSQSLDGQSTSSPS* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00863 934 CDD PBP1_GABAb_receptor_plant 43 432 IPR044440 -
Rops7g00863 934 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 893 IPR015683 -
Rops7g00863 934 FunFam Glutamate receptor 714 822 - -
Rops7g00863 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Rops7g00863 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Rops7g00863 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Rops7g00863 934 Gene3D - 157 430 - -
Rops7g00863 934 Pfam Receptor family ligand binding region 60 413 IPR001828 -
Rops7g00863 934 FunFam Glutamate receptor 157 316 - -
Rops7g00863 934 SMART GluR_14 478 820 IPR001320 GO:0015276|GO:0016020
Rops7g00863 934 SUPERFAMILY Periplasmic binding protein-like I 37 469 IPR028082 -
Rops7g00863 934 Gene3D - 472 586 - -
Rops7g00863 934 Gene3D - 587 711 - -
Rops7g00863 934 Pfam Ligand-gated ion channel 820 851 IPR001320 GO:0015276|GO:0016020
Rops7g00863 934 PIRSF IGluLR_plant 3 934 IPR017103 -
Rops7g00863 934 Gene3D - 64 405 - -
Rops7g00863 934 FunFam Glutamate receptor 588 718 - -
Rops7g00863 934 FunFam Glutamate receptor 472 588 - -
Rops7g00863 934 Gene3D - 712 822 - -
Rops7g00863 934 MobiDBLite consensus disorder prediction 912 934 - -
Rops7g00863 934 Coils Coil 901 921 - -
Rops7g00863 934 Pfam Bacterial extracellular solute-binding proteins, family 3 532 819 IPR001638 -
Rops7g00863 934 SUPERFAMILY Periplasmic binding protein-like II 453 820 - -
Rops7g00863 934 CDD GluR_Plant 475 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00863 Rops-Chr7 11563382 11568073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00863 2 785 Ion Channels AT1G05200 66.834 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00863 K05387 - gmx:100783715 1501.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00863 7 11563382 11568073 Rops7g00863 7 11563382 11568073 ECH
Rops7g00863 7 11563382 11568073 Rops3g01244 3 17843374 17848826 PCT