Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00848 ATGGGTTACCTCAAGAGACTGAGGTCTCTCTTATTGTTAGTGGTGTTGCTTGTGACATGTGCAAGTGGGGAGGACCCTTATAGGTTCTACACTTGGAATGTCACCTATGGTGACATTTATCCTCTTGGGGTTAAACAACAGGGGATATTGATAAATGGGCAGTTCCCAGGACCACAGATTGAATCCGTGACCAATGATAACTTGATTATCAATGTTTTCAATAGCTTGAATGAACCTTTCCTTATCTCTTGGAATGATGTGCAGCAGTGGAGGAATTCATGGCAAGATGGAGTATATGGTACTAATTGTCCAATCCCACCAGGGCAGAACTTCACTTATGTTCTTCAAGTAAAGGATCAGATTGGTAGCTACTTCTACTATCCTTCCCTTGCATTCCACAAGGCAGCAGGGGGTTATGGTGGCTTCAAAATTGCCAGCCGCCCTAGAATTCCTGTACCTTTTCCTCCTCCAGCAGGAGATTTCACCATATTGGCTGGAGACTGGTACAAGAGAAATCACACTGATCTGAGGGCCATTCTAGATAGTGGAAGCGACCTTCCTTTTCCTGATGGGCTTATCATCAATGGTCATGGTTCCAATGCTAACACATTCACGGTTGATCAAGGCAAGACTTACAGATTCCGGATATCAAATGTTGGGCTCACAACTTCCATCAATTTCAGAATCCAAGGGCATAAGATGCTGCTAGTTGAGGTGGAAGGAATCCACACTCTCCAAAACACTTATGATTCCCTTGACATTCATTTGGGGCAGAGTTTATCTGTATTGGTCACTGCTGATCAACCACCCCAAGACTATTACATTGTTGTCTCGACACGATTCACCTCTCAAGTGTTGACTGCTACCTCAATACTTCATTACAGTAACTCAGCAGGAAGTGTTTCGAGTCCTCCCCCAGGGGGGCCAACAACTCAAATTGATTGGTCTCTTGAACAGTCACGCTCTCTCAGGCGGAATCTGACAGCTAGTGGACCAAGGCCTAATCCACAAGGATCTTACCATTATGGTTTGATAAACACAACCCGTACAATCAGACTTCAAAACTCTGCACCAATTATCAATGGCAAGCAGAGATATGCTGTCAATAGTGTTTCCTTCATCCCTGCTGATACACCACTTAAACTGGCTGATTACTTCAAGATCCCGGGAGTGTTCAGCCTTGGAAGTATCCCGGATAACCCCACTGGTGGTGGTGGTTACCTCCAAACTTCTGTCATGGCTGCTGATTTCCGAGGTTATATAGAGGTTGTGTTTGAGAATCCTGAAGACACTGTGCAATCATGGCACATTGATGGCCACCACTTCTTTGTTGTAGGAATGGATGGAGGCCAATGGTCAGCTGCAAGCAGGTCAAATTACAATTTGAGAGACACAATTTCTCGTTGCACAGTTCAGGTGTATCCCAAGTCATGGACTGCAGTGTACATGCCTTTGGACAATGTGGGAATGTGGAATGTGAGGTCAGAGAACTGGGCTCGTCAATACTTAGGACAGCAATTTTATCTTCGTGTGTATTCCCCTGCCAATTCATGGAGAGATGAGTATCCAATACCAAGTAATGCTTTGAGTAAAGATGAATATGTCTATGCTATATCTTCAGCTTCAGATTCTAGTTCTGATTCCAATTATGAAGATTTAAGTGGAGAATCGAGTGGTGCAGATAAAGTGGTGGAGCACAAAGATGATGATGAATACTCGATGGTTCAGCAACTATCAATTTCTGCTGATTTGACGGAAACTAAAATGGAAAAAAATAAGAAGAGAGGAAAGGAAAAGAAACCTAAGCTAGTGTTGCCGTGGATGATATGGGAAGAGGAGCGAGAGAGATTCATTGATCAGCATATATTAGAAGATGTTTCCTTAGATAATCAGAGTGAAATAATGAAAGAAACTGCTGAGACGTCCTCTGATCTGACTATACCTTTGTTTAGATACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGAGGCTAAAGGTGGAATACTTGCGGATGAAATGGGAATGGGGAAGACTATTCAAGCAATCGCCCTTGTCCTTGCCCAACGTGAATTCCACCGAAGGAGTTGTGAACCAGATGAACCCGTACCCTCACCTTTACCAAGTTCATCTGGAGTGTTGACTAGTATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAATGAGATCGATCGAGTTACTTCGAATGGAAGCACCGAGGTTCTGGTTTATGATGAGGCTGGGAGGGGGAATAGCAGGGAACAGTTCTCGGAGTCTGATTGCAGGAACACTCCTTCCACCACCGGCACCGGAGTTGTTGGCCGGGAAGAACCCATGTCCCAGTTTGTCGGCGAGAGTAGAGCAGCATCCGATAACCTCTCGGAAACCACTGTAGTCGACAGCGAATCATCGTCTAAAGTTCTGGGAACAAACATACACAGATTAAGACCTAGAGCAACCTTCGCTTTCTTCTATTTGCTTCCCATTTCGTTCCAAACCCTCACCTTTGGATCTCACACACTCACAAAACACTCTGACCCAGATAAAAAACCAGCGAGCAGAAGCAAAACCGTCGAAAACAAAGCTCCACCAAACAAAATTCAGATCTCAAACGATGAAAAGCTTCAAGCTTTGCTGTGTTTAGCTTTGCGGAGAGTCCTTCGAAAAAGAGAGAGAGAGAAGGGAAATGGGGTTTTATGA 2727 0.443 MGYLKRLRSLLLLVVLLVTCASGEDPYRFYTWNVTYGDIYPLGVKQQGILINGQFPGPQIESVTNDNLIINVFNSLNEPFLISWNDVQQWRNSWQDGVYGTNCPIPPGQNFTYVLQVKDQIGSYFYYPSLAFHKAAGGYGGFKIASRPRIPVPFPPPAGDFTILAGDWYKRNHTDLRAILDSGSDLPFPDGLIINGHGSNANTFTVDQGKTYRFRISNVGLTTSINFRIQGHKMLLVEVEGIHTLQNTYDSLDIHLGQSLSVLVTADQPPQDYYIVVSTRFTSQVLTATSILHYSNSAGSVSSPPPGGPTTQIDWSLEQSRSLRRNLTASGPRPNPQGSYHYGLINTTRTIRLQNSAPIINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSLGSIPDNPTGGGGYLQTSVMAADFRGYIEVVFENPEDTVQSWHIDGHHFFVVGMDGGQWSAASRSNYNLRDTISRCTVQVYPKSWTAVYMPLDNVGMWNVRSENWARQYLGQQFYLRVYSPANSWRDEYPIPSNALSKDEYVYAISSASDSSSDSNYEDLSGESSGADKVVEHKDDDEYSMVQQLSISADLTETKMEKNKKRGKEKKPKLVLPWMIWEEERERFIDQHILEDVSLDNQSEIMKETAETSSDLTIPLFRYQKEWLAWALKQENSEAKGGILADEMGMGKTIQAIALVLAQREFHRRSCEPDEPVPSPLPSSSGVLTSIKGTLVICPVVAVTQWVNEIDRVTSNGSTEVLVYDEAGRGNSREQFSESDCRNTPSTTGTGVVGREEPMSQFVGESRAASDNLSETTVVDSESSSKVLGTNIHRLRPRATFAFFYLLPISFQTLTFGSHTLTKHSDPDKKPASRSKTVENKAPPNKIQISNDEKLQALLCLALRRVLRKREREKGNGVL* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00848 908 Gene3D - 159 333 IPR008972 -
Rops7g00848 908 CDD CuRO_2_AAO_like_1 159 294 IPR034271 -
Rops7g00848 908 SUPERFAMILY Cupredoxins 344 525 IPR008972 -
Rops7g00848 908 MobiDBLite consensus disorder prediction 850 876 - -
Rops7g00848 908 MobiDBLite consensus disorder prediction 766 783 - -
Rops7g00848 908 SUPERFAMILY Cupredoxins 24 174 IPR008972 -
Rops7g00848 908 CDD CuRO_1_AAO_like_1 29 145 IPR034273 GO:0005507
Rops7g00848 908 CDD CuRO_3_AAO_like_1 375 497 IPR034275 GO:0005507
Rops7g00848 908 SMART ultradead3 645 878 IPR014001 -
Rops7g00848 908 FunFam Monocopper oxidase-like protein 158 332 - -
Rops7g00848 908 FunFam Monocopper oxidase-like protein 344 534 - -
Rops7g00848 908 Pfam Multicopper oxidase 387 513 IPR011706 GO:0005507|GO:0016491
Rops7g00848 908 PANTHER MULTI-COPPER OXIDASE 46 507 IPR045087 -
Rops7g00848 908 Gene3D - 343 537 IPR008972 -
Rops7g00848 908 Gene3D - 620 786 IPR038718 -
Rops7g00848 908 SUPERFAMILY Cupredoxins 154 334 IPR008972 -
Rops7g00848 908 Gene3D - 27 148 IPR008972 -
Rops7g00848 908 MobiDBLite consensus disorder prediction 851 865 - -
Rops7g00848 908 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Rops7g00848 908 Pfam Multicopper oxidase 160 296 IPR001117 -
Rops7g00848 908 MobiDBLite consensus disorder prediction 761 783 - -
Rops7g00848 908 Pfam SNF2-related domain 654 765 IPR000330 GO:0005524|GO:0140658
Rops7g00848 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 767 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00848 Rops-Chr7 11292353 11306745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00848 532 769 RAD5 or RAD16-like Gene Family AT1G05120 45.378 9.99e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops7g00848 SNF2_N 2e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00848 - - gmx:100791301 997.653