Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00846 ATGATATTGCTGAAACACAAAGTTTTGAAGAGCATAGTACTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAGGGATTGCCTGGATATAAAAGAGCAAGACTATTATGGATCGATATACACGGAAAGTCAGGCTGAGTTTAACACATATGTCGAAGCAAATAATCTGATGAATAATTACGCTCATGTATTTGACCTACTCACACGGCTGCGTCAGGCTATTGATCATCCATACCTTGTGGTATATTCTCCAACTGTGGAACAAGAATGTGGCATTTGTCATGAGCCAGTTGAAGATCCTGAAGTTACCTCATGTCAGCATATTTTTTGCAAGGCATGCTTGGTAGAATTCACCACTTCCTTGGGACGGGTATCATGCCCCTCGTGCTCTCAATTACTTACTTTTGATTTTACTTCCAACGAGGATATTGGGGACCGGGCTACTAAAACAACAATCAAGGGTTTTAGGTCCTCAAGCATTTTAAATAGAATTCGGCTAGAGAACTTTCAGACGAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTTGAAAGAGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTTTTGGATCTTATAAACTTCTCTTTGCTCAAGTCTGGAGTATCTTGCGTTCAATTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCGTTAAGAGATTTAATGATGATCCAGACTGCAAGATATTTCTCATGAGCTTGAAGGCTGGCGGTGTTGCACTCAATTTGACAGTAGCGTCACATGTTTTCCTTATGGAGCCTTGGTGGAACCCAGCTGCGGAGCGTCAGGCTCAAGACAGAATTCACCGAATTGGGCAACATAAACCTATAAGAATTGTGAAGTTTATCATGGAGAACACAATCGAGGAGAGGGTTTTGAAGCTGCAGGAGAGGAAGGAACAATTGTTTGAAGGGATTATGGGCGGCTCTTCTGAAGCTGTGGTGCAATTGACAAGGGAGGACTTAAGATTTTTATTTCATTAA 1065 0.4169 MILLKHKVLKSIVLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYGSIYTESQAEFNTYVEANNLMNNYAHVFDLLTRLRQAIDHPYLVVYSPTVEQECGICHEPVEDPEVTSCQHIFCKACLVEFTTSLGRVSCPSCSQLLTFDFTSNEDIGDRATKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINFSLLKSGVSCVQLNGSMSLAARDAAVKRFNDDPDCKIFLMSLKAGGVALNLTVASHVFLMEPWWNPAAERQAQDRIHRIGQHKPIRIVKFIMENTIEERVLKLQERKEQLFEGIMGGSSEAVVQLTREDLRFLFH* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00846 354 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 5 354 - -
Rops7g00846 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 152 IPR013083 -
Rops7g00846 354 ProSitePatterns Zinc finger RING-type signature. 116 125 IPR017907 -
Rops7g00846 354 Pfam Zinc finger, C3HC4 type (RING finger) 101 140 IPR018957 GO:0046872
Rops7g00846 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 353 IPR027417 -
Rops7g00846 354 CDD SF2_C_SNF 183 310 - -
Rops7g00846 354 SMART helicmild6 216 299 IPR001650 -
Rops7g00846 354 SMART ring_2 101 140 IPR001841 -
Rops7g00846 354 ProSiteProfiles Zinc finger RING-type profile. 101 141 IPR001841 -
Rops7g00846 354 Pfam Helicase conserved C-terminal domain 185 299 IPR001650 -
Rops7g00846 354 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 181 350 IPR001650 -
Rops7g00846 354 Gene3D - 38 354 IPR027417 -
Rops7g00846 354 SUPERFAMILY RING/U-box 95 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00846 Rops-Chr7 11281122 11286473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00846 1 353 RAD5 or RAD16-like Gene Family AT1G05120 72.603 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00846 K15083 - gmx:100786366 612.453