Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00844 ATGGAGTGGACAAGAGGCAACATCATAGGACATGGCTCATCAGCCACCGTCTACTTCTCCACCTCTTCCCACTCTGATGAAATCTCCGCCGTAAAGTCATTGGAGCTGTCACTATCACAGTCAAAACAGCTTCAAAGAGAACAAAAAATCTTGTCTTCTCTCTCCTCTCCTTACATAGTTAGCTACAAAGGTTGTAACATTACAAGGGAAAACAACAAGTTCATGTTCAACCTCTTCATGGAGTACATGCCCTTTGGGACCCTCTCTCAGGTGACTCGCCGGCGGCACGGTGGCCGGCTAGATGAGCCGGCGATCGCACAATACACAAGGCAAATTTTGATGGGGTTGGAGTACTTGCATGAAAACGGTGTTGTGCATTGTGATATAAAGGGTAGTAACATATTGATGGGTGAAGATGGAGCTAAAGTTGGAGACTTTGGATGTGCCAAGTTTGTTACTGAGACGGCGGCGCCGATAGCCGGAACGCCGATGTTCATGGCGCCGGAAGTTGCACGTGGGGAAGAACAAGGGTACCCTTGTGATGTTTGGGCACTTGGATGCACAGTGGTTGAAATTGCCACTGGTTTTGCACCTTGGCCTAATGTGGAAGACCCTGTTTCTGTTCTGTATCAAGTTGCATATTCTGGTGAGTTACCTGAGATTCCTTGTTTTCTTTCTGATCAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGGAGGAATCCTAAGGAGAGGTGGAGTTGTAGTCAATTGTTGAAGCATCCATTTCTTGTGGAATTCAATTCCAATGATAAGAAAATCCAGGAATCTAATTCAAGTTCACCAACTAGTATTCTTGAGCAAGGTTTTTGGAATTCCATGGAAGAGTCAGAATGCTTCTTAATTGGCAATCTGGGTAAGACAAGTTTTGAGAATTCACCTGCTGGTAGGATCAAAAGGCTAGCTGTGTGTTCAGGGGATCCCAATTGGACACGGTATGATGAGAATTGGATCACAACTAGAGGCAATGAAGAAGGGGCTTCAACTAGTCATGAGTTGGATTTTGATGAGTTTGAGAAAAATAATGTTAGTGGTAGAATTAGTGGTTATTTTTGTGAGAATTATAAATGTAGGGATGTTAGTTATATAGTTAATAGTCTCAATTTTGAGATAGGCATTGCTGAGATGCTGCTTCCTTCAACATTAGATTTTTTGTGA 1194 0.4313 MEWTRGNIIGHGSSATVYFSTSSHSDEISAVKSLELSLSQSKQLQREQKILSSLSSPYIVSYKGCNITRENNKFMFNLFMEYMPFGTLSQVTRRRHGGRLDEPAIAQYTRQILMGLEYLHENGVVHCDIKGSNILMGEDGAKVGDFGCAKFVTETAAPIAGTPMFMAPEVARGEEQGYPCDVWALGCTVVEIATGFAPWPNVEDPVSVLYQVAYSGELPEIPCFLSDQAKDFLGKCFRRNPKERWSCSQLLKHPFLVEFNSNDKKIQESNSSSPTSILEQGFWNSMEESECFLIGNLGKTSFENSPAGRIKRLAVCSGDPNWTRYDENWITTRGNEEGASTSHELDFDEFEKNNVSGRISGYFCENYKCRDVSYIVNSLNFEIGIAEMLLPSTLDFL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00844 397 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 287 - -
Rops7g00844 397 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Rops7g00844 397 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Rops7g00844 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops7g00844 397 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00844 397 FunFam Mitogen-activated protein kinase kinase kinase 17 2 309 - -
Rops7g00844 397 CDD STKc_MAPKKK 2 256 - -
Rops7g00844 397 Pfam Protein kinase domain 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00844 397 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Rops7g00844 397 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00844 Rops-Chr7 11272036 11273229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00844 1 335 MAP Kinase Kinase Kinase AT1G05100 50.282 7.68e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops7g00844 Pkinase 2.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00844 K20716 - gmx:100797801 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00844 7 11272036 11273229 Rops11g01076 11 15825269 15830478 ECH
Rops7g00844 7 11272036 11273229 Rops7g00844 7 11272036 11273229 ECH
Rops7g00844 7 11272036 11273229 Rops3g01219 3 17281731 17282948 PCT