Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00842 ATGGCAAGAGGGAGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCACCAGAAGCCAATAGTTCTCAACTCTTTTCCTGAAGACAACAACAACAATAGCAGCCAACACAAGTGGAAACTTGGTCCCAACATGGATACCACAATTAGCACAAGAAACTCTCCTCCATCCACTCCCTGCGACACCAACAACAACATCCCTTTCCAAGTCAACCTTAGCTGCTCCCTTGATAGCCATGACTCTCCTCCACCCTCTGATGATAAGAGACCCCTCATAGATGAAATGGACTTCTTCTCTCACCACAACAACAAGGATCACAACCATGCCTCTGCCTCTGCCTCTACCTCTGCACCTCACCTTCATCATCATCCACATGATCATTCCACCTCTCCTCCTATATTGGAATTGAAAGTAAATACTGGTCTGAATCTTCTTACAACCAACACTAGCAGTGATCAATCCATGGTAGAGGATAACACATCACCCAATTTAGAAGACAAAAAGGCTAAGATTGAGCTGGTTGTTCTTCAAGCTGAGCTTGAGCGGATGAAGGTGGAGAATCATCGGCTGAGAAACATGCTTGATCAAGTTAACACCAATTACCAGGCGCTAGAGATGCATTTGGTGAGTTTGATGCAGGAACAGAAGGGGGAAGAGGGTGAAGAAGAGCAACAGCAAGTGTTTGATGGAAAATTAGAAGAGGAGAAACAAACTGGGAATGGTGAAGCTTTAGTGCCAAGGCAGTTTATGGATCTTGGGCTGGCTACTAATGCTGATACTAATGAGCCTTCACTTTCTTCATCAGTGGTAAGAAGTCAGAATCGGTCAAAGTCACCTACAAATAACGTAGAGGTGGCTTCCAAGGAATTTGGCACAAAGAAAAATGGGAATGCTAGTGATGAAACAGTTGTGTTTGATCAAGACACGAAGGAATTTGGTACTGGAATTGAAAGAGAAGATAGCCCACCAGATCAGGGTTTAGCTGCTAATAACGTTCCAAAGTTTAGTCCTCCTAGAAATGTTGATCAAGCTGAGGCTACCATGAGGAAAGCAAGAGTTTCAGTTAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGCGAAAGTACGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCATATTACAGATGCACCATGGCTGCTGGTTGCCCAGTGAGAAAACAGGTACAGAGGTGTGCTGAAGACCGAACAATACTTATCACAACATATGAAGGAAATCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACATCCTCAGCTGCAAGAATGCTACTTTCAGGATCAATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCCTCTAGCATGGCAACTATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGACTTGACTCAATCTCCAAACCCATTACAGTTCCCAAAGCCCCCAAGTCAATTTCAAATCCCCTTATTGGGTGTCCCTCAGAATTTTGCCAATTCCTCAGCCTCATTACTGCCTCAGATATTTGGTCAGGCATTGTACAACCAGTCAAAGTTTTCAGGGCTTCAAATGTCTCAAGATATAGACCTTTCCCAATTAGGTAATCAATCTCAACAGGCACCACCACACCTTGCTGACACAGTTAGTGCTGCCATTGCAGCTGACCCCAACTTCACTGCAGCTTTAGCTGCAGCTATCACTTCCATTATTGGGGGTGCACAGCCAAACAACAATAACAGTACTAATAATAATGGCAACACAACGGCCAACAACAGCAATGGCAATAATACATCAAGCAACAGCAATAGCAATGGGAAGCAATAA 1878 0.4483 MARGSGLSIDSDPIGSFFHQKPIVLNSFPEDNNNNSSQHKWKLGPNMDTTISTRNSPPSTPCDTNNNIPFQVNLSCSLDSHDSPPPSDDKRPLIDEMDFFSHHNNKDHNHASASASTSAPHLHHHPHDHSTSPPILELKVNTGLNLLTTNTSSDQSMVEDNTSPNLEDKKAKIELVVLQAELERMKVENHRLRNMLDQVNTNYQALEMHLVSLMQEQKGEEGEEEQQQVFDGKLEEEKQTGNGEALVPRQFMDLGLATNADTNEPSLSSSVVRSQNRSKSPTNNVEVASKEFGTKKNGNASDETVVFDQDTKEFGTGIEREDSPPDQGLAANNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPSQFQIPLLGVPQNFANSSASLLPQIFGQALYNQSKFSGLQMSQDIDLSQLGNQSQQAPPHLADTVSAAIAADPNFTAALAAAITSIIGGAQPNNNNSTNNNGNTTANNSNGNNTSSNSNSNGKQ* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00842 625 Gene3D WRKY domain 351 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops7g00842 625 MobiDBLite consensus disorder prediction 590 625 - -
Rops7g00842 625 Coils Coil 168 216 - -
Rops7g00842 625 SUPERFAMILY WRKY DNA-binding domain 359 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops7g00842 625 MobiDBLite consensus disorder prediction 316 342 - -
Rops7g00842 625 MobiDBLite consensus disorder prediction 101 134 - -
Rops7g00842 625 SMART WRKY_cls 366 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops7g00842 625 MobiDBLite consensus disorder prediction 259 289 - -
Rops7g00842 625 MobiDBLite consensus disorder prediction 28 67 - -
Rops7g00842 625 Pfam WRKY DNA -binding domain 368 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops7g00842 625 ProSiteProfiles WRKY domain profile. 361 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops7g00842 625 FunFam probable WRKY transcription factor 31 351 428 - -
Rops7g00842 625 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 148 606 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00842 Rops-Chr7 11249712 11252373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00842 70 604 WRKY Transcription Factor Family AT1G62300 49.097 3.41e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops7g00842 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00842 - - gmx:100127384 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00842 7 11249712 11252373 Rops11g01078 11 15843862 15846403 ECH
Rops7g00842 7 11249712 11252373 Rops7g00842 7 11249712 11252373 ECH
Rops7g00842 7 11249712 11252373 Rops3g01218 3 17261134 17263981 PCT