Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00830 ATGACTCATCCCTACTGCTCCAATGACTTCAATGGTTGGTTTGACCTCAATTCTCCATCTTGCTCCAGCCCACCATTCTTTTTTCCTTCAACTCATCATCACTGCACAAGTAGCATCTCTTTTGTTCAGTTTCAATCTTCTCCCTCTTCTCCTACTCCTCCAAGAGAACCCCTTCCTCTCCTTAACCTAAGCCCTACAAAACCTCAAGATCTTGAATCATCCTTTAGTGCCATGGAAGTCAACATGAAGGAAAACTCTTTGGATGAAGATACTGTGACTGTGGCTTTGCGCTTAGGGCTTCCAAGCATAAGTTCAGCTGATTTATCTTCAAACATATACTCCACTGAGGTTTCAGACAAAGTCACTGTTGCTTCTGAGTATCCATCAACTAGAATTAATAGGGGTCAGTATTGGATCCCTACCCCTTCTCAGATTCTGATTGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAAACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTTAGACTTCCTTGCTATTGCTGTGCACCAGGATGCAAGAACAATATTGATCATCCAAGAGCAAAACCACTCAAAGACTTTAGAACCCTTCAAACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAGTGTTGCAAAGCATTTGCTGTTAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAGCTTTGGTATTGTTCTTGTGGGTCCGATTTTAAGCATAAAAGATCTCTTAAAGATCATATCAAGGCATTCGGACATGGACATAAAGCTTATGGAATCGATTGTCTTGATCAAGATGATGAAGTTGGCTCTGAAATTGAGCAAGAAAATGAATCTTTCCAGTCATAG 945 0.419 MTHPYCSNDFNGWFDLNSPSCSSPPFFFPSTHHHCTSSISFVQFQSSPSSPTPPREPLPLLNLSPTKPQDLESSFSAMEVNMKENSLDEDTVTVALRLGLPSISSADLSSNIYSTEVSDKVTVASEYPSTRINRGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHGHKAYGIDCLDQDDEVGSEIEQENESFQS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00830 314 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Rops7g00830 314 Gene3D Classic Zinc Finger 151 174 - -
Rops7g00830 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Rops7g00830 314 SUPERFAMILY beta-beta-alpha zinc fingers 218 256 IPR036236 -
Rops7g00830 314 FunFam Zinc finger protein WIP2 205 287 - -
Rops7g00830 314 PANTHER ZINC FINGER PROTEIN WIP2 28 311 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00830 Rops-Chr7 11090278 11092401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00830 1 307 C2H2 Transcription Factor Family AT1G51220 59.172 4.94e-128 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00830 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00830 - - gmx:100789416 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00830 7 11090278 11092401 Rops7g00830 7 11090278 11092401 ECH
Rops8g02848 8 64137393 64139773 Rops7g00830 7 11090278 11092401 ECH
Rops6g00618 6 16124768 16127128 Rops7g00830 7 11090278 11092401 ECH
Rops7g00830 7 11090278 11092401 Rops3g00720 3 8791201 8793446 PCT