Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00821 ATGGCAGCAACGGCGTCGTCTCAACCGCAAGGGTACCACCAACCTTCTTCAATCGAAGAAGTTCGAACCCTTTGGATTGGTGATTTACAGTATTGGGTCGACGAAACCTATCTCAGTCACTGCTTCGCTCACACCGGCGAGGTAGTTTCAATCAAAATCATACGCAACAAGATGACTGGTCAACCAGAGGGTTATGGTTTCGTAGAATTTGTTTCACACGCTGCAGCAGAAAGGGTTCTTCAGAGTTACAATGGGACTCAAATGCCTGGAACTGAACAAACTTTTAGGTTAAATTGGGCTTCTTTTGGGATAGGGGAACGTCGTCCCGATGCGGGTCCAGAACATTCGATTTTTGTTGGTGATCTTGCCCCTGATGTTACTGATTATTTGCTTCAGGAGACTTTTAGGGCACATTACCCTTCGGTTAGGGGTGCTAAGGTTGTGACTGACCCTAATACTGGACGGTCTAAGGGTTATGGTTTTGTTAAGTTTTCTGATGAGAATGAAAGGAACCGAGCCATGAATGAAATGAATGGGGTTTATTGCTCCACTAGGCCTATGCGGATTAGTGCTGCCACGCCTAAGAAGACCACTGCTTTTCAACACCCTTATGCTGCTACTGCTCCTAAAGCAATATATCCAATCCCGGCGTACACTGCCCCTGTGAGTACAGTTCCACCAGATTATGATCCAAATAATACTACTATATTTGTTGGTAGTTTGGATCTTAATGTCTCAGAGGAGGAGCTGAAGCAACACTTTCTTCAATTTGGAGAAATTGTCTCTGTCAAAATTCATGCTGGCAAAGGATGTGGTTTTGTTCAATTTGGGACTAGAGCATCTGCTGAAGAAGCTATTCAGAAGATGCAGGGAAAAATGATAGGCCAACAAGTGATCCGAATTTCTTGGGGTCGAGCCCCAACAGCTAGACAGGATGTACCTGGTGGCTGGGGACCGCAGATGGATCCAAGTCAATGGAGTGCCTACTATGGATATGGACAGGGTTATGAGGCCTATGCTTATGGGGCTACTCAGGATCCTTATGCATATGCTGCATATGCTGGCTATGCACAATACCCCCAACAAGTGGAAGGTGCTCAAGATGTATCAGCTATGTGTGTGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCCTTGGCAATGCCTGATGTTGATAAGTTGAATGCTGCATATCTCTCAGTACATGGAAGTGCCATTTTAGGGCGGCCCCTCTGGCACAAAACCTATTCATCATCCTTACAGCAAGCTTAG 1275 0.458 MAATASSQPQGYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMNEMNGVYCSTRPMRISAATPKKTTAFQHPYAATAPKAIYPIPAYTAPVSTVPPDYDPNNTTIFVGSLDLNVSEEELKQHFLQFGEIVSVKIHAGKGCGFVQFGTRASAEEAIQKMQGKMIGQQVIRISWGRAPTARQDVPGGWGPQMDPSQWSAYYGYGQGYEAYAYGATQDPYAYAAYAGYAQYPQQVEGAQDVSAMCVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRPLWHKTYSSSLQQA* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00821 424 FunFam polyadenylate-binding protein RBP45 218 313 - -
Rops7g00821 424 SMART rrm1_1 23 98 IPR000504 GO:0003723
Rops7g00821 424 SMART rrm1_1 235 302 IPR000504 GO:0003723
Rops7g00821 424 SMART rrm1_1 116 190 IPR000504 GO:0003723
Rops7g00821 424 CDD RRM1_SECp43_like 23 103 - -
Rops7g00821 424 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Rops7g00821 424 Gene3D - 21 101 IPR012677 -
Rops7g00821 424 Gene3D - 105 202 IPR012677 -
Rops7g00821 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 306 IPR000504 GO:0003723
Rops7g00821 424 Gene3D - 221 313 IPR012677 -
Rops7g00821 424 FunFam Polyadenylate-binding protein RBP47B 21 101 - -
Rops7g00821 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 92 IPR000504 GO:0003723
Rops7g00821 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 300 IPR000504 GO:0003723
Rops7g00821 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 182 IPR000504 GO:0003723
Rops7g00821 424 CDD RRM2_SECp43_like 114 193 - -
Rops7g00821 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 194 IPR000504 GO:0003723
Rops7g00821 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 310 - -
Rops7g00821 424 SUPERFAMILY RNA-binding domain, RBD 107 198 IPR035979 GO:0003676
Rops7g00821 424 FunFam Polyadenylate-binding protein RBP47B 103 205 - -
Rops7g00821 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 102 IPR000504 GO:0003723
Rops7g00821 424 SUPERFAMILY RNA-binding domain, RBD 213 335 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00821 Rops-Chr7 10948619 10952970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00821 21 324 Eukaryotic Initiation Factors Gene Family AT2G23350 27.244 5.34e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00821 - - tpra:123894020 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00821 7 10948619 10952970 Rops7g00821 7 10948619 10952970 ECH