Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00818 ATGAGGAAGCCAGAGCTGTCTAGTAACAACAACAACAAGCTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGACAAGCTCATGAACTATATGCTAAACAATGGACAAGGTTGTTGGAGTGATGTTGCAAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAAAGAGGAGCATTCTCACCCCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCTGCGCGCTTGCCAGGGAGAACTGACAATGAAATAAAAAACTTTTGGAATTCAACGATAAAGAAACGACTTAAGAACATGTCTTCCTCAACCTCACCAAATGCAAGCGAGTCAGCGTATGACCCTAACAAAGATCTCAATATGGGAGGGTTTATTTCTGCACAACATCAACAACATACAAGCTATGTGCCTATGTTCAGTTCATCTCCATCACCATCAATGCAAACCACAGTTGTCAATACCATGATTGATAGGTTGCCAATGGTGGATCATGGACTAAACATGCCAGTTGCTGGAGAATATTTCAACCATACAGGGCCATGCTTCTCACAAAGTGGCTTTGACAACAAAGGTTCTTCTTATTTGGAAAATGGGGTCTTTGGGAGTGTAAATATTGGAGTAGAAGGGGATATGTTTGTTCCTCCTCTAGAGAATGTTAGCACTATTACTGATAATCATAACCTGAGAGTGGAGAGTACATGCAAGAAAGAAACTAACAATAGTTACTTTGATGACATAAACAATATCCTTAATAACTGCAATATAGCCAACAATAACACTGCTGAAAATAGGGCTGGGGTGGAGAATTTATTTCAAGAGCAGTTAACCATGGGAGATTGGGACTTTGAGGAGTTGATGAAAGATCTTTCCTCATTTCCATTTCTTGATTTTTCATTCTGA 963 0.4039 MRKPELSSNNNNKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSSTSPNASESAYDPNKDLNMGGFISAQHQQHTSYVPMFSSSPSPSMQTTVVNTMIDRLPMVDHGLNMPVAGEYFNHTGPCFSQSGFDNKGSSYLENGVFGSVNIGVEGDMFVPPLENVSTITDNHNLRVESTCKKETNNSYFDDINNILNNCNIANNNTAENRAGVENLFQEQLTMGDWDFEELMKDLSSFPFLDFSF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00818 320 Gene3D - 70 140 - -
Rops7g00818 320 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Rops7g00818 320 CDD SANT 71 111 IPR001005 -
Rops7g00818 320 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Rops7g00818 320 PANTHER MYB DOMAIN PROTEIN 55 8 272 - -
Rops7g00818 320 FunFam Transcription factor MYB46 70 139 - -
Rops7g00818 320 FunFam MYB transcription factor 13 69 - -
Rops7g00818 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Rops7g00818 320 Gene3D - 13 69 - -
Rops7g00818 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Rops7g00818 320 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Rops7g00818 320 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Rops7g00818 320 CDD SANT 19 63 IPR001005 -
Rops7g00818 320 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Rops7g00818 320 SMART sant 68 116 IPR001005 -
Rops7g00818 320 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00818 Rops-Chr7 10891409 10893786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00818 1 318 MYB Transcription Factor Family AT3G08500 44.847 6.17e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g00818 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00818 K09422 - gmx:100786151 463.381