Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00798 ATGAGCTTGGACGTGCCACCCGCTACGGCGTCGTTTTGGTGCTATAGTTGCACGCGTTTCGTTCACCTCTTGGACCACAACGACGTCGTTTGCCCTCACTGTCAAAGCGGCTTCGTTGAAGAGATCCACCCCGGCCAGTCTCCAGCGGTGTCTCTTTTCGCCGACAGCCTTCAGTCTTCGAGGAGGCACGGTTTCCGCCGGAGACGCCGCCACACTGGTAGCCGCTCGCCGTTCAACCCAGTCATCGTCCTCCGTGGACCCGGTGAGGAAGGTGCCGGCGGTGATAACGACGGGAGTAGCTTCGAGTTGTTCTACGACGACGGCGACGGCACCGGTCTCCGACCACTTCCTCCGACCATGTCGGAGTTCTTGCTTGGCTCAGGCTTCGATCGGTTACTGGAGCAATTCTCTCAGATCGAGATTAACGGTTTTGGAAGATCGGAAAACCCGCCGGCGTCGAAATCGGCGATAGAGTCAATGCCGACGGTTGAGATCACGGAGGAACAAGTGGAAACGGAGACACACTGTGCCGTTTGCAAAGAAGCGTTCGAGCTAGGTTCGGAGGCGCGTGAGATGCCATGCAAGCACCTTTACCATTCGGATTGCATTATCCCATGGCTTTCGATTCGGAACTCGTGTCCGGTGTGCCGGCACGAGTTGCCGTCGGATCAGAACCCTTCGGAAAACAGAATCTCCGGTCAGATCGACGAAGAATCGGTAGGGTTGACCATATGGAGGTTACCAGGCGGTGGATTCGCCGTCGGGAGATTCTCCGGAGGTCGGAGAGCCGGCGAGAATCACTTGCCAGTCGTATACACTGAGATGGATGGTGGTGGTAGCAATTCAAGTGGAGGTTCTAGAAGAATCTCGATGGCTCTTGGAAGCAACAACAGAGTTAGAGAGAGTCGTGGCTTTCGCAGAATTTTTCGTAATTTCTTTTCCTTCTTTGGTGGGTCCCTTAGTAGAACTCGTAGCTTATCGAGTTCATTGTTCAGTAGAAGCTCACGGAGAAGAACCCCAACTTGGGTTGAAGATTGA 1038 0.5453 MSLDVPPATASFWCYSCTRFVHLLDHNDVVCPHCQSGFVEEIHPGQSPAVSLFADSLQSSRRHGFRRRRRHTGSRSPFNPVIVLRGPGEEGAGGDNDGSSFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRSENPPASKSAIESMPTVEITEEQVETETHCAVCKEAFELGSEAREMPCKHLYHSDCIIPWLSIRNSCPVCRHELPSDQNPSENRISGQIDEESVGLTIWRLPGGGFAVGRFSGGRRAGENHLPVVYTEMDGGGSNSSGGSRRISMALGSNNRVRESRGFRRIFRNFFSFFGGSLSRTRSLSSSLFSRSSRRRTPTWVED* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00798 345 SMART ring_2 176 216 IPR001841 -
Rops7g00798 345 FunFam E3 ubiquitin-protein ligase RING1-like 138 223 - -
Rops7g00798 345 SUPERFAMILY RING/U-box 156 223 - -
Rops7g00798 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 221 - -
Rops7g00798 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 223 IPR013083 -
Rops7g00798 345 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Rops7g00798 345 CDD RING-H2_RNF126-like 176 217 - -
Rops7g00798 345 MobiDBLite consensus disorder prediction 63 96 - -
Rops7g00798 345 Pfam Ring finger domain 175 217 IPR001841 -
Rops7g00798 345 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Rops7g00798 345 Pfam Protein of unknown function (DUF1117) 240 336 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00798 Rops-Chr7 10717971 10719442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00798 115 228 C3H Transcription Factor Family AT5G01980 46.491 1.51e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00798 K11982 - gmx:100804867 422.935