Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00784 ATGTGGGAGGTAGCCGTCACCTACGTTCATGCATGCGAAAGTAGACTTGAAGAATCACGTGGAACTCTGGGCAGGGAGATGCTGAATGAAACCAAGTTGGAGGACCTTCTTCATGGACCAAAATATGTTCTTACTTACGAGGATAAAGATGGTGATTGGATGCTTGTGGGTGACGTTCCCTGGGAGATGTTTATTGAAACATTCAGGAGGCTGAGGATCATGAAGAGTTCAGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGAGCTAG 285 0.4667 MWEVAVTYVHACESRLEESRGTLGREMLNETKLEDLLHGPKYVLTYEDKDGDWMLVGDVPWEMFIETFRRLRIMKSSDAIGLAPRAVEKSKSRS* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00784 94 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 27 81 IPR003311 GO:0005634|GO:0006355
Rops7g00784 94 ProSiteProfiles PB1 domain profile. 1 76 IPR000270 GO:0005515
Rops7g00784 94 Pfam AUX/IAA family 18 85 IPR033389 -
Rops7g00784 94 SUPERFAMILY CAD & PB1 domains 38 75 - -
Rops7g00784 94 Gene3D - 5 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00784 Rops-Chr7 10595870 10596374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00784 14 76 B3 DNA Binding Superfamily AT1G19220 38.095 1.15e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops7g00784 AUX_IAA 1.2e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00784 K14484 - gmx:100783314 140.969