Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00776 ATGGGAGTTTGTTTGAGTGCCCAAATTAAAGCTGAAAGCCCTTATAACACTGGGTTAAATTCAAAGTACGCTAGTACAAATGGCAATGATCTCAGCAGCACAAACAGTAAGGGTTCAGTTGTCTCGGTTCCTCAGACTCCTAGGAGTGAGGGTGAGATCTTGCAATCATCCAATTTAAAGAGCTTTGCTCTAGCAGAACTTAAGACAGCAACTAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCATTGGCTGCTGCCAAACCTGGCACTGGCATTGTTATTGCTGTGAAAAGACTCAATCAAGATGGCTTCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGATATTGCCTTGAAGATGAACACCGCCTTCTTGTCTATGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATATTTTCAACCTCTTTCTTGGAACCTTCGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAACAAAAGTGATATATAGAGATTTCAAGACTTCAAATGTCTTGTTGGATTCAAATTATACTGCAAAGCTTTCTGATTTTGGGCTGGCAAAGGATGGTCCAACAGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACAGGACATCTTACTGCTAAGAGTGATGTTTATAGCTTTGGAGTTGTCCTGCTGGAAATGTTATCTGGCAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAACTTGGTGGAATGGGCTAAACCCTACCTTGCTAACAAACGTAAGGTTTTCCGCGTGTTAGACACCCGGCTCGAAGGGCAGTATTCAACAGATGAGGCCTCCAAGGTAGCCACCCTTGCTTTGAGATGCCTATCAACAGAATCCAAGTTCAGGCCAAACATGGATGAAGTAGTTAGAACTTTGGAGCAGCTTCAGGTTTCTAATGTAAATGGAGGCAATCAAAATCCATCTGTTGAGAAGCGTCGTGCTCGTAGAAGAAGTGCTGATGATGTTAACCGTGTGAAGAAGACCCCCACATCTTATCCCAGGCCATCTGCATCCTCTCTCTATACTTGA 1221 0.4406 MGVCLSAQIKAESPYNTGLNSKYASTNGNDLSSTNSKGSVVSVPQTPRSEGEILQSSNLKSFALAELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLAAAKPGTGIVIAVKRLNQDGFQGHREWLAEVNYLGQLSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWNLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYTAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKVFRVLDTRLEGQYSTDEASKVATLALRCLSTESKFRPNMDEVVRTLEQLQVSNVNGGNQNPSVEKRRARRRSADDVNRVKKTPTSYPRPSASSLYT* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00776 406 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Rops7g00776 406 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Rops7g00776 406 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Rops7g00776 406 MobiDBLite consensus disorder prediction 26 49 - -
Rops7g00776 406 MobiDBLite consensus disorder prediction 373 388 - -
Rops7g00776 406 FunFam Probable serine/threonine-protein kinase PBL8 160 376 - -
Rops7g00776 406 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Rops7g00776 406 SUPERFAMILY Protein kinase-like (PK-like) 42 356 IPR011009 -
Rops7g00776 406 CDD STKc_IRAK 80 359 - -
Rops7g00776 406 Gene3D Transferase(Phosphotransferase) domain 1 160 382 - -
Rops7g00776 406 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops7g00776 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Rops7g00776 406 MobiDBLite consensus disorder prediction 362 406 - -
Rops7g00776 406 PANTHER OS01G0588500 PROTEIN-RELATED 38 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00776 Rops-Chr7 10483248 10486445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00776 52 356 Glycoside Hydrolase AT3G07070 49.346 6.56e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops7g00776 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00776 - - gmx:100798404 720.694