Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00754 ATGTCTCAAAGAATCGGAACAAGGCTTTTCGTCAGCAGACTATCGTTTTTCACTACAAAAGAGCAGCTTAAGATGTTGTTCTCTCCATTCGGAGAACTTACAGAAGCTACACTTGTGATGGACCCAACAACCCGAAAGCCCAAAGGGTTTGGTTTTGTCTCCTACGAGTCTGAAACTGAAGCGGAAAAAGCCATCAAAGCCATGAATGGCAGGATAGTTAATGGAAGGTTGATTTTCGTTGAACCTGCAAAAATACATTAA 261 0.4176 MSQRIGTRLFVSRLSFFTTKEQLKMLFSPFGELTEATLVMDPTTRKPKGFGFVSYESETEAEKAIKAMNGRIVNGRLIFVEPAKIH* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00754 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Rops7g00754 86 Gene3D - 2 85 IPR012677 -
Rops7g00754 86 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 84 - -
Rops7g00754 86 SUPERFAMILY RNA-binding domain, RBD 6 84 IPR035979 GO:0003676
Rops7g00754 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Rops7g00754 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
Rops7g00754 86 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00754 Rops-Chr7 10175593 10177298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00754 6 84 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 1.12e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00754 - K13195 pcin:129306862 132.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00754 7 10175593 10177298 Rops7g00754 7 10175593 10177298 ECH