Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00752 ATGGCTAATTGTTTGATGCTACTAACCAAAGTTGGTGAAAATGAAACCAACCCATCAAGAAAAGGAGACTTAAAGGATGGTGCTTTTAAGTGCAAGAGTTGCAATAGGCGATTCTCTTCCTTTCAAGCTCTTGGGGGTCACAGGGCAAGTCACAAGAAGCCGAAGCTCATGGTCACAGACCTTTCATGCCATCACAAGTTATCTAGCTCTGCCATGAAACCAAGGATGCACCCATGTCCAATTTGTGGGCTTGAGTTTGCTATTGGACAAGCTCTTGGGGGGCACATGAGAAAACATAAAGCTGCTATTAATGATGGTATGATGATTCGTAACCATGACTTGTCTATCTTGAAGAAATCCAAAGATGCTGAAAGGTTGAATTTGTGCTTGGATTTGAACTTGACGCCATTGGAGAATGATCTTAAGCTCAACCTTAGGACACCTGTTCTGAATTGTTTCATTTGA 465 0.4194 MANCLMLLTKVGENETNPSRKGDLKDGAFKCKSCNRRFSSFQALGGHRASHKKPKLMVTDLSCHHKLSSSAMKPRMHPCPICGLEFAIGQALGGHMRKHKAAINDGMMIRNHDLSILKKSKDAERLNLCLDLNLTPLENDLKLNLRTPVLNCFI* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00752 154 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Rops7g00752 154 SMART c2h2final6 77 99 IPR013087 -
Rops7g00752 154 SMART c2h2final6 29 51 IPR013087 -
Rops7g00752 154 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Rops7g00752 154 SUPERFAMILY beta-beta-alpha zinc fingers 29 99 IPR036236 -
Rops7g00752 154 PANTHER ZINC FINGER PROTEIN ZAT5 1 139 - -
Rops7g00752 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Rops7g00752 154 Gene3D Classic Zinc Finger 8 102 - -
Rops7g00752 154 Pfam C2H2-type zinc finger 77 101 - -
Rops7g00752 154 Pfam C2H2-type zinc finger 28 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00752 Rops-Chr7 10154025 10154691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00752 1 145 C2H2 Transcription Factor Family AT2G28710 48.000 4.36e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00752 zf-C2H2_6 5.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00752 - - gmx:100781211 223.402