Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00749 ATGGTTCAACAGCAATTCCGGAAAGGTCCCTGGACAGAACAGGAAGACATGAAATTGGTGTCCTATGTTGGATGGTTTGGAGACCGTAGATGGGACTTTATAGCTAGGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTGCGTTGGGTTAATTACCTGCATCCTGGTCTCAAACGAGGGAAGATGACACCCCAGGAAGAGAGACTCGTGCTGGAGCTTCAATCAAAATGGGGAAACAGATGGTCAAGAATTGCTCGCAAATTACCTGGGCGTACAGATAATGAGATTAAGAATTATTGGAGAACCCATATGAGGAAAAAGGCTAATGACAAAAAGCAAGGAGCAGTTCCATCCTCAACACCTTCTAGTGGTCATTTCTCAAACAATCATGAAGTGGATTCACATGCTTCCAAAAAGGCTGGTGAAGAGAGTTTTTATGACACAGGTGGTCTTAATATGGTAGCAGCATCAACCCAAGTCAAGGTAGCAAAAGATCAAGAAGGTGAACAAGAGTTTTCTATGGATGATATATGGAAGGATATTGATCTATCAGAAGAGAACAGTCTGCAGCCAGTTTATGATGGAAACAGTGAAGAAGGCTGCAACTTCTATTGTCCACCAGTGGCTTCTCCATCATGGGAGTATTCTTCTTCAGACCCATTATGGGTGATGGATGAAGAAAGTATGCTATTCCCTTTAAGTGACCCATATTTTTCCTGCGATGCACAAGGCAGCGCATTTCTAACCGGCTAA 759 0.4308 MVQQQFRKGPWTEQEDMKLVSYVGWFGDRRWDFIARVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKANDKKQGAVPSSTPSSGHFSNNHEVDSHASKKAGEESFYDTGGLNMVAASTQVKVAKDQEGEQEFSMDDIWKDIDLSEENSLQPVYDGNSEEGCNFYCPPVASPSWEYSSSDPLWVMDEESMLFPLSDPYFSCDAQGSAFLTG* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00749 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Rops7g00749 252 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 138 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops7g00749 252 SMART sant 60 108 IPR001005 -
Rops7g00749 252 SMART sant 7 57 IPR001005 -
Rops7g00749 252 MobiDBLite consensus disorder prediction 115 132 - -
Rops7g00749 252 FunFam MYB transcription factor 63 129 - -
Rops7g00749 252 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Rops7g00749 252 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Rops7g00749 252 MobiDBLite consensus disorder prediction 108 143 - -
Rops7g00749 252 CDD SANT 63 106 IPR001005 -
Rops7g00749 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 55 IPR017930 -
Rops7g00749 252 Gene3D - 63 132 - -
Rops7g00749 252 CDD SANT 10 55 IPR001005 -
Rops7g00749 252 FunFam Myb transcription factor 8 60 - -
Rops7g00749 252 Gene3D - 8 60 - -
Rops7g00749 252 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Rops7g00749 252 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Rops7g00749 252 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00749 Rops-Chr7 10109023 10110212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00749 1 236 MYB Transcription Factor Family AT5G59780 58.537 1.78e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g00749 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00749 K09422 - tcc:18590753 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00832 3 10173597 10174917 Rops7g00749 7 10109023 10110212 PCT