Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00746 ATGCTGAGTCAGTGCAACATTCTCAAGTGTCTCTTCTGTAGAGTTAACAGATCAAGTTCCCCAAGAAATTGGGTTCAAGGGCAATATCTAGATGAGTCCATTACAGATGAAGATTCTCTACAAATTCAAATCAGTAACTTGGAGTTGTCTGTCATAAACTCTCTTCCCGTGTCTCAGTTTAAGAAAAATGAACGAGAAAATATGCCAATTAATGCAGACTGTGCTATTTGTTTGGGGGAATTTGAAGAAGGGGAATGGCTAAAACTTCTTCCTAATTGTTCCCACGGCTTCCATGTTTCTTGCATTGACACATGGTTCCAGTTTCAATCAAATTGCCCCCTATGCAGATCTCATGTCCATCATGACCTTGTTGCTAATCCAGTGTTTAGTATCTTTTAA 399 0.391 MLSQCNILKCLFCRVNRSSSPRNWVQGQYLDESITDEDSLQIQISNLELSVINSLPVSQFKKNERENMPINADCAICLGEFEEGEWLKLLPNCSHGFHVSCIDTWFQFQSNCPLCRSHVHHDLVANPVFSIF* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00746 132 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Rops7g00746 132 SMART ring_2 74 115 IPR001841 -
Rops7g00746 132 SUPERFAMILY RING/U-box 73 122 - -
Rops7g00746 132 Pfam Ring finger domain 73 116 IPR001841 -
Rops7g00746 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 124 IPR013083 -
Rops7g00746 132 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 119 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00746 Rops-Chr7 10067285 10067683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00746 42 130 C3H Transcription Factor Family AT1G72220 43.820 2.60e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00746 - - gmx:102660592 160.999