Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00745 ATGGACTCTGCTTCATTCCCTCATCCTTTGATTTCTCACGTCATCACTAGCTCAAGCTTGCACCGCTCCTATGTTACTCATCATAGTGCAAGATTTGGCCTATGGAAGAAAAGGGTGTGGAAATCAGCTTTTTGTGCTATTGGGTTTTCTGCAGTTGGAGTAGAAGACGTTTTTGATGATAGTAACTTGAAGAGAAAGGAGAATGGTTCCCTCTTAGGTGCCTTAAACGAGTCTTCTTCAGCACCATTTGGAACATTAGACGCTGAAATAACACAAGAAACCACTGATTTCTTTGTCAGTGATGCAGAAGGTGATCCAGACTGTCCCTCTAAAGGGTACTCTTCCATTGAACAGGCCCTTAATGCATTACGTGAAGGAAAGTTTGTGATTGTAGTAGATGATGAAAACGGGGATATCGAAGGAAATCTTATAATGGCTGCATCTCTTACTAGTACCAAGGATGTGGCTTTTATGATGAAGCATGGATCAGGGATTGTTTCTGTTGGCATGAAAGAGGAAGATCTTCAAAGACTGAACCTCCCTCTTATGTCACCAGAGACTGAAGATGAGGATTCTTCTGCCCCCACCTTCACTATCACAGTGGATGCAAAATCAGGAACTTCGACAGGTGTATCAGCTTCAGATAGAGCAAAAACAGTTCTTGCTCTGTCATCTCCTGAGTCTAAATCAGAAGACTTCAGAAAACCGGGTCATGTGTTTCCCCTTAGTTACAGAAATGGTGGGGTACTTAGGAGGGTAGGTCATACTGAAGCTTCAGTGGATTTAGTTACTCTTGCTGGCTTGCCCCCAGTTTCTGTTCTTACAGCTCTTGTTGATGGGGACGATGGCTCTATGGCATCTTTACCCGATTTAAGAAAGTTAGCATTGGAATACAGCATACCAGTTGTTTCAATAACTGATTTGATAAGGTATCGGAGAAAGCGAGAAAAATTGGTTGAAAGAACTTCTGTTTCTCGCTTGCCTACCAAATGGGGTCTATTTCAAGCATATGGCTATCGCTCAAAGTTGGATGGAACTGAACACGTGGCTGTTGTAAAGGGAAACATGGGAGATGGGCAAGATGTTCTTGTAAGAGTACATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTAGGTGTGACTGTGGCAACCAATTAGATTTGGCAATGCAGTTGATTGAAGAAGCTGGTAGAGGAGTAGTTGTGTATCTTCGAGGTCATGAAGGAAGAGGCATTGGACTTGGTCACAAACTTAAAGCCTATAATTTGCAGGATCAAGGTCATGACACTGTCCAGGCAAACATAGAATTAGGCTTAGCTGTTGATGCTCGTGAGTATGGGATTGGTGCTCAGATTCTGAGGGATATAGGAGTTCAAACTATGAGGTTGATGACCAACAACCCAGCAAAGTTCATTGGTCTTAGAGGGTATGGTTTGGCAGTGATAGGGCGCGTTCCTGTGATGACACCAATAACTAAGGAAAACAAACGGTACCTGGAAACAAAGAGGACCAAGATGGGTCATGTTTATGGGTCTGATATTCAAGGATCTATCCCTGGATTCGACGATTCAAATGCAGATTTCATAGCTAAGGTTTATTCTTCTTCGCTGACCATGGCTCCAGCTAAAGTTGATAGTTCAAAGAAGACTGATCCGAAGGCACAGGCCTTGAAAACTGCTAAAGCAGTCAAATCAGGCCCTACCTTTAAGAAGAAGGCAAAAAAGATCCGAACATCGGTTACGTTCCATCGACCAAAGACTTTGAAAAAGGATAGGAATCCCAAATACCCTCGTATTAGTGCTCCACCAAGGAATAAGCTTGATCACTATCAGATTCTGAAATATCCTCTCACAACTGAGTCGGCAATGAAAAAGATTGAAGACAACAATACTTTGGTTTTCATTGTTGACTTGCGAGCTGACAAGAAGAAGATCAAGGATGCAGTGAAAAAAATGTATGACATCCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGATGCCTTGGATGTAGCAAACAAGATTGGGATCATCTAA 2082 0.4256 MDSASFPHPLISHVITSSSLHRSYVTHHSARFGLWKKRVWKSAFCAIGFSAVGVEDVFDDSNLKRKENGSLLGALNESSSAPFGTLDAEITQETTDFFVSDAEGDPDCPSKGYSSIEQALNALREGKFVIVVDDENGDIEGNLIMAASLTSTKDVAFMMKHGSGIVSVGMKEEDLQRLNLPLMSPETEDEDSSAPTFTITVDAKSGTSTGVSASDRAKTVLALSSPESKSEDFRKPGHVFPLSYRNGGVLRRVGHTEASVDLVTLAGLPPVSVLTALVDGDDGSMASLPDLRKLALEYSIPVVSITDLIRYRRKREKLVERTSVSRLPTKWGLFQAYGYRSKLDGTEHVAVVKGNMGDGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQLIEEAGRGVVVYLRGHEGRGIGLGHKLKAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDIGVQTMRLMTNNPAKFIGLRGYGLAVIGRVPVMTPITKENKRYLETKRTKMGHVYGSDIQGSIPGFDDSNADFIAKVYSSSLTMAPAKVDSSKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00745 693 Hamap 50S ribosomal protein L23 [rplW]. 613 693 IPR013025 GO:0003735|GO:0005840|GO:0006412
Rops7g00745 693 Gene3D - 574 693 IPR012677 -
Rops7g00745 693 ProSitePatterns Ribosomal protein L23 signature. 671 686 IPR001014 GO:0019843
Rops7g00745 693 FunFam 60S ribosomal protein L23a 573 693 - -
Rops7g00745 693 SUPERFAMILY YrdC/RibB 112 316 IPR017945 -
Rops7g00745 693 Gene3D GTP cyclohydrolase II 319 490 IPR036144 -
Rops7g00745 693 NCBIfam GTP cyclohydrolase II 324 510 IPR000926 GO:0003935|GO:0009231
Rops7g00745 693 SUPERFAMILY RibA-like 317 489 IPR036144 -
Rops7g00745 693 FunFam Riboflavin biosynthesis protein RibBA 319 490 - -
Rops7g00745 693 Pfam Ribosomal protein L23 613 674 IPR013025 GO:0003735|GO:0005840|GO:0006412
Rops7g00745 693 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 104 318 - -
Rops7g00745 693 Pfam Ribosomal protein L23, N-terminal domain 554 603 IPR005633 -
Rops7g00745 693 Pfam GTP cyclohydrolase II 324 487 IPR032677 -
Rops7g00745 693 Gene3D DHBP synthase 107 318 - -
Rops7g00745 693 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 117 311 IPR000422 GO:0008686|GO:0009231
Rops7g00745 693 Hamap GTP cyclohydrolase-2 [ribA]. 317 513 IPR000926 GO:0003935|GO:0009231
Rops7g00745 693 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 610 686 IPR012678 GO:0003735|GO:0005840|GO:0006412
Rops7g00745 693 CDD GTP_cyclohydro2 318 509 IPR000926 GO:0003935|GO:0009231
Rops7g00745 693 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 115 312 IPR000422 GO:0008686|GO:0009231
Rops7g00745 693 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 112 509 IPR016299 GO:0009231
Rops7g00745 693 PANTHER GTP CYCLOHYDROLASE II-RELATED 112 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00745 Rops-Chr7 10059048 10065267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00745 540 693 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.312 1.60e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00745 K14652 - gmx:100786573 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00745 7 10059048 10065267 Rops7g00745 7 10059048 10065267 ECH