LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops7g00717	ATGTTAGATCTTAATCTGAATGCCGATTCGACTCAGAACGATGACTCGCTCGTCGTGTTGGATAAGTTTCCAGAAGCATCTTCTGGAACCTCCAATTCCTCCATCGTGAATGCTGAGGGGTCAAGTAACGAGGACTCGTGTTCCACACGCGCCGGGGACGCGTTCACCTACAATTTTGGTATCCTTAAGGTGGAAGGAGGGAACGGCGTCGTTGCAACCAAGGAGCTTTTCCCGGTGCAGCCTTCAACGTCTTCGATTTTGGCAAGGAAGAGCTTGGTGGATCTCTCGCTGGATCATCATCATCGAGGCCAAAACGACGACGTTAATTTGGTTCAGGTTCAGCAACAACAGCCTCAGGCGAAGAAGAGTAGGAGAGGTCCAAGGTCTCGGAGTTCTCAGTATAGAGGAGTCACCTTCTATAGAAGAACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACTGCTCATGCCGCTGCTAGAGCCTATGATCGAGCTGCTATCAAGTTCAGGGGACTTGATGCTGACATCAATTTCAATCTCGTTGATTATGAGGAGGATATGAAACAGATGACAAATCTTTCCAAGGAGGAATTCGTGCACATACTACGTCGCCACAGTACCGGTTTCTCAAGGGGGAGCTCAAAATACCGAGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATACCTTGGGCTATTCGACAACGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCAGTGACTAACTTCGAGCCAAGTACATATGAAAGCGAGATGAAACCGGAAGCTATTAATGAAGGTAGCAGTCACAATCTTGACCTCAATTTGGGCATAGCAACCCCAGGACATGGTCCAAAAGAAAACAGGGGGCATCTTCAGTTCCAGTCCGTCCCTTACAACTTGCACCCTGGAAGAAGTTCAAGGATGGAGACTAATGTTAATTCAGTTATCGGTGATCCATCTTTGAAAAGGCTCGTTGTAACTGAAGAGCGTCCTTCTGTATGGAATGCCACGTATTCCAGTTTCTTTCCCAGTGAGGAAAGAGCAGAGAGAATGGGCATAGATCCTTCGGAAGGACTCCGCAACTGGGCGTGGCAAACACATGGCCAGGTCACTGCTACCCCAGTTCCACCGTTCTCTAGTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCCACTGCCATCTTTCCAACAAAATCTACGAACTCAATTCCCCAGAGCATCTGTTTCACTTCATCCAGTGCATCTGGTAACAATGCAGCTCAATACTTCTACCAGGTGAAGTCCCCGCAAGCACCACCCTAG	1407	0.479	MLDLNLNADSTQNDDSLVVLDKFPEASSGTSNSSIVNAEGSSNEDSCSTRAGDAFTYNFGILKVEGGNGVVATKELFPVQPSTSSILARKSLVDLSLDHHHRGQNDDVNLVQVQQQQPQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDMKQMTNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEVEAARAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGSSHNLDLNLGIATPGHGPKENRGHLQFQSVPYNLHPGRSSRMETNVNSVIGDPSLKRLVVTEERPSVWNATYSSFFPSEERAERMGIDPSEGLRNWAWQTHGQVTATPVPPFSSAASSGFSISATFPSTAIFPTKSTNSIPQSICFTSSSASGNNAAQYFYQVKSPQAPP*	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops7g00717	468	ProSiteProfiles	AP2/ERF domain profile.	133	189	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	SMART	rav1_2	133	195	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	SMART	rav1_2	225	288	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	SUPERFAMILY	DNA-binding domain	132	189	IPR016177	GO:0003677
	Rops7g00717	468	CDD	AP2	133	188	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	SUPERFAMILY	DNA-binding domain	224	283	IPR016177	GO:0003677
	Rops7g00717	468	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	103	317	-	-
	Rops7g00717	468	ProSiteProfiles	AP2/ERF domain profile.	225	282	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	Pfam	AP2 domain	224	274	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	Pfam	AP2 domain	133	181	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	PRINTS	Ethylene responsive element binding protein signature	264	284	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	PRINTS	Ethylene responsive element binding protein signature	226	237	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	CDD	AP2	224	284	IPR001471	GO:0003700\|GO:0006355
	Rops7g00717	468	MobiDBLite	consensus disorder prediction	114	134	-	-
	Rops7g00717	468	Gene3D	AP2/ERF domain	132	191	IPR036955	GO:0003700\|GO:0006355
	Rops7g00717	468	Gene3D	AP2/ERF domain	224	283	IPR036955	GO:0003700\|GO:0006355
	Rops7g00717	468	FunFam	AP2-like ethylene-responsive transcription factor	132	191	-	-
	Rops7g00717	468	FunFam	AP2-like ethylene-responsive transcription factor	224	284	-	-
	Rops7g00717	468	MobiDBLite	consensus disorder prediction	25	47	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops7g00717	Rops-Chr7	9550026	9553917	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops7g00717	103	308	AP2-EREBP Transcription Factor Family	AT4G36920	77.990	2.13e-97	298

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Rops7g00717		AP2	9e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops7g00717	K09284		-	gmx:100777102	754.592

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops7g00717	7	9550026	9553917	Rops7g00717	7	9550026	9553917	ECH
	Rops7g00717	7	9550026	9553917	Rops3g00882	3	11321886	11325961	PCT