Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00706 ATGATGCCTGAAGAAGCAGTTTCTGTTCTTTCCAACTTCATAGGAACCTTGGCTCAAGATCAAGAGCAAGACCCAAACTCAAACCCTAATCCTAACCCTAATTCAAATTCAGCTAAGAGAAAAAGAAGTCTACCAGGAACACCAGATCCGGATGCAGAAGTGATTGCTCTGTCGCCAAAATCACTGATGGCAACTAACCGTTTCATTTGTGAAGTGTGCAACAAGGGTTTTCAAAGAGACCAGAACCTGCAGCTGCATAGGCGTGGACACAATCTACCATGGAAGCTGAAGCAGAGAAAGAAGGAAGAGGTGAAGAAGAAGGTGTATGTTTGTCCTGAGAAGAGTTGTGTGCACCATGACCCTTGTAGAGCCTTGGGAGACCTCACGGGGATAAAGAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCGACAAGAAATATGCAGTTCAATCTGACTGGAAGGCCCATAGTAAGATTTGTGGGACTAGACAGTACACATGTGACTGTGGCACACTATTCTCCAGGAAGGACAGCTTCTTAACACATAGAGCCTTTTGTGACACCTTGGCGGAACGAAGTGCGAGAATAACTTCAGTTCCAGCTATTTTACCAAACTTTGGAAATGATCTTTTGATTAACCCTCAAGAACCATTGATGGGGAATTTCGTGGATGCAGATCATGACCAGAAGATGAGGGTTCCACTATGGCTAGACCATACCCATAATCCTCAGCTTCATCATCCTCTTAGCGTTCCAATTCCAAGTGTATTCTCATCAAGAGCAAACTCATCATGCACCTTGCCTGATTTAGGCCAAACAAGTAACATGTTTGGGTCATTGCCACAAGCACAGTGGGTGAATTGCCCATACCCAGCAGCATCATTTACGAGTGGAACTCTATCTATGCCTGCGATGCCACATGGAGTGAAGCTAGAACAAGAAGAGAACAAAGGGGAATTGTCACGTAGCAAAGCAGCACAAATGGAATCTACAAGGATCAACAGCAACTCAGCCTTCAACAACTCTAACAGTGTCTTTGGCTCGCTGGGCTCGAATCTCTCAACCACTTCCAGCAACAACCTGAATAATTATGTTGTTGAAATTCAGAAATTTTTCAAGCAAGCAAATCAAGCTGAAAGCTTCAACATGGTGAATTCCCAACCAAGCACCAATGTTGGAGGTGGATTTTCATTGAATGATTCAAACTCGAGTTCGTTTGTGAATAGCACGAAGAATATGGATCATATAGTGATGCCGAGGGATGATGAAAAGTGGCAAAGTCAACAACCACCAAATATGGACAAGCCGCTACATACAAGTTCGAATAATGAAGACTTAACCAGAGACTTCCTAGGTGTTGGAGATGACTCATTGAACCGGCCCTTCTTACAGCAAGAGCTCGCCAAGTTCATTCCAATAGGATCAGTCATGAACCTACAAAGCCAGTTTGGTGGACACTACTGA 1482 0.4413 MMPEEAVSVLSNFIGTLAQDQEQDPNSNPNPNPNSNSAKRKRSLPGTPDPDAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLKQRKKEEVKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCDKCDKKYAVQSDWKAHSKICGTRQYTCDCGTLFSRKDSFLTHRAFCDTLAERSARITSVPAILPNFGNDLLINPQEPLMGNFVDADHDQKMRVPLWLDHTHNPQLHHPLSVPIPSVFSSRANSSCTLPDLGQTSNMFGSLPQAQWVNCPYPAASFTSGTLSMPAMPHGVKLEQEENKGELSRSKAAQMESTRINSNSAFNNSNSVFGSLGSNLSTTSSNNLNNYVVEIQKFFKQANQAESFNMVNSQPSTNVGGGFSLNDSNSSSFVNSTKNMDHIVMPRDDEKWQSQQPPNMDKPLHTSSNNEDLTRDFLGVGDDSLNRPFLQQELAKFIPIGSVMNLQSQFGGHY* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00706 493 Gene3D Classic Zinc Finger 123 201 - -
Rops7g00706 493 SMART c2h2final6 144 164 IPR013087 -
Rops7g00706 493 SMART c2h2final6 109 139 IPR013087 -
Rops7g00706 493 SMART c2h2final6 68 90 IPR013087 -
Rops7g00706 493 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Rops7g00706 493 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Rops7g00706 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Rops7g00706 493 MobiDBLite consensus disorder prediction 12 42 - -
Rops7g00706 493 MobiDBLite consensus disorder prediction 1 51 - -
Rops7g00706 493 MobiDBLite consensus disorder prediction 428 451 - -
Rops7g00706 493 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Rops7g00706 493 MobiDBLite consensus disorder prediction 431 451 - -
Rops7g00706 493 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Rops7g00706 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 466 IPR031140 -
Rops7g00706 493 Gene3D Classic Zinc Finger 47 119 - -
Rops7g00706 493 FunFam protein indeterminate-domain 12-like 47 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00706 Rops-Chr7 9360926 9363239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00706 38 217 IDZ Gene Family AT3G45260 83.978 1.51e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00706 zf-C2H2_jaz 8.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00706 K25870 - gmx:100811687 506.908