Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00700 ATGGAAATTGATCTGAATGATGCAGTGACTGAGGCTGAGAAGAATGCATATTGTAATGGGGACTGTGAGCAAGGTGCTTGTGTTTGCTCTTTGTCCTCTCCAACTTGTTCATCTTCTACTTCCTCTTCAGCTCGTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCTCTTACCTCCCTGCCAACGAAAGGGAATGTGGTGGTTTATTTTCCACAAGGTCACTTAGAACAAGCTGCATCTTTCTCTCCCTTCTCACCAATGGAGATGCTCACCTATGATCTTCAGCCACAGATCTTTTGCAGAGTTGTCAATGTTCAGCTACTTGCTAATAAGGAGAATGATGAGGTTTACACACAGGTTACTTTGCTCCCCCAGGAACAGCTAGCAGGGACACTTTTGGAAGATAAAGAGCTTGAGGGACTGGGAGCAGATGAAGAGGGAAATGGAAAAACACTAACAAAATCAACCCCTCATATGTTCTGCAAAACACTTACTGCCTCTGATACCAGCACTCATGGGGGGTTCTCAGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCGGGGGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAGAGTTGTTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCCGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTGTGCCCTACCAAAAATATGTCAAAAGCATCAAGAATCCAGTGACCATAGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAGTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACCAATCATCAAGATAGAGTATCTCCATGGGAGATTGATCCTTCTGCTTCTCTCCCTCCCTTGAGCATTCAATCTTCCAGAAGGCTGAAGAAACTGCGGACAGGTCTGCAAGATGACTCACCCAGTCACGTCATCACTGCAGGAGGCAGTGGGTTTATGGACTTTGAGGAGTCTGTAAGATTGCCCAAGGTCTTGCAAGGTCAAGAAAATACAAGATTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGATATCAGATCTCCAAATCATCCTAATATTGCATCAACTGGAGTAAGAAAGATTACTGCTGCTGAGATTATGAGGGTTCACCCTTCTAGTTATGCGGGCTTCACAGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGCAAACCCAATGTCAGTTGCACAAACTACAACCTGCATCAGGGAACCAGACCTAACTTTCACTCTTTAGGACCAGAAGTTCTTCAAACTCCCTATTTTCCTTATGGTGATATTCACAAAGCTGGTCAAGGTAGCAGCATGTTATGCTCTAAACCCACCAATTTCCAAAGAGAGAATGTCCCACTTTCTTCTTCCACTCTGTCAGGGATCATGAGAAATGAAGTTGGACTGCCAGATCTCACAATCCCAAATGAGCAGAAGCTGCGGGACAATATTTCTGGTGCTGCTTCTTTAGGGTCAAACATGAGGATTCCAAATGAAGACAATGTCAAGGGGAAGGTAAATGCTTGTAAGCTATTTGGATTTCCCTTGTCTGGGGAAACCACCACCCAAAATACACAGAACTCTACTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGGTTGAGCAGCTACAATGACCTGCTGAGTGAACTAGAGAGACTATTTGCCATGGAAGGCCTTCTAAGAGATCCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTGGGGGATGACCCATGGCATGAATTCTGCGATGTGGTAACCAAGATTCATATATATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATACACAGAGCTGTTTGGAACAGGCACCACTAATTATGGAGGCTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTCGTCTCCGACAGTTGTTAGAATCTAG 2412 0.4374 MEIDLNDAVTEAEKNAYCNGDCEQGACVCSLSSPTCSSSTSSSARVSSSYLELWHACAGPLTSLPTKGNVVVYFPQGHLEQAASFSPFSPMEMLTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQEQLAGTLLEDKELEGLGADEEGNGKTLTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMKFEMDESPERRCSSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRTGLQDDSPSHVITAGGSGFMDFEESVRLPKVLQGQENTRFMSLYYGCDTVTKQPEFDIRSPNHPNIASTGVRKITAAEIMRVHPSSYAGFTETNRFPRVLQGQEICPLRSLTGKVDLNLGAWGKPNVSCTNYNLHQGTRPNFHSLGPEVLQTPYFPYGDIHKAGQGSSMLCSKPTNFQRENVPLSSSTLSGIMRNEVGLPDLTIPNEQKLRDNISGAASLGSNMRIPNEDNVKGKVNACKLFGFPLSGETTTQNTQNSTKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFAMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVTKIHIYTQEEVEKMTIGMMNDDTQSCLEQAPLIMEASKSSSVGQPDSSPTVVRI* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00700 803 FunFam Auxin response factor 670 764 - -
Rops7g00700 803 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 764 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops7g00700 803 ProSiteProfiles PB1 domain profile. 675 757 IPR000270 GO:0005515
Rops7g00700 803 FunFam Auxin response factor 162 266 - -
Rops7g00700 803 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Rops7g00700 803 CDD B3_DNA 162 264 IPR003340 GO:0003677
Rops7g00700 803 Gene3D - 162 266 IPR015300 -
Rops7g00700 803 FunFam Auxin response factor 327 400 - -
Rops7g00700 803 SUPERFAMILY CAD & PB1 domains 676 754 - -
Rops7g00700 803 Gene3D - 328 400 - -
Rops7g00700 803 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops7g00700 803 Gene3D - 670 764 - -
Rops7g00700 803 SUPERFAMILY DNA-binding pseudobarrel domain 157 275 IPR015300 -
Rops7g00700 803 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Rops7g00700 803 SMART B3_2 164 266 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00700 Rops-Chr7 9262886 9268729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00700 46 803 B3 DNA Binding Superfamily AT5G60450 60.578 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops7g00700 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00700 - - gmx:100812909 1400.19