Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00688 ATGAGTGCTGAGCAAAAACATGATGCAGCTTCAAGTCCAGTTCACAAGGTTGATGATAAAATGGGGGTAATTGATGAAACTTCACATGTTAATAATTGGAGGAGACAGAATCTTCTCTTGGAAATACCCTCTAGAACAACAGAAGAGTCTTCGTCTTTTTCTTCTGCTTCTCAGGGTTTTTTTGGAATAAGGATGCCACTGACACCAAGTCCAACTCCTACTCATAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAATTAACAATGATCCCTTGCCATCTTCATCATCAAGAGGAAAATCATCCATAAGAAGCATCTTACCAAAATTGAACTTCAGGTATAGGACATCATCATCAGATATTGAAAAGGCTACAACTGCAGCTCCAGAAGGTTCCTTTTCAGGCCATCAAGAAAAGTCTTCTTCAATCTCAAGATCAGTGTCCCTATCTAAGATATTTGCTCCCAAGATTAACAGAACTTCATCATTACCAGTAGAAGAAATTGGGCGTGCAAACACAGAATCTGCTCTGGGTGGGTGTCTCGGTGGTTCTCCATATATAAGAGAGAACCAGGGTACTATAGCTCGCTCTCGTTCAGAGCCTGTTGATAACCAAGAAAAAAGCATAAGGAGAATGGATAGATTTTTCCGCATTGTTCCTTCCACTCCTCGAGTAAAGGAAGTGAATGAATGGTTGAAGAACATGTCCACAGCAAATGATACTGAAAATGATAGTGAGGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACACTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAAGGTAACAAGACTTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCAAAATGCTCAAACACAGAATACTGGAGCAAGGTCTCAGCAGGAAAATGATCTAAGGATTTGGCAGGAACTGCCAGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGCTTCCTTGAGCAACTATTGGTTGGAAAAATGAAAACCAGGGCAATTTTCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCTCCTTGACATCATCAACCATGGTGAGGAGCAGGTTCATCTGGATTTATGCAGCTGCCCAATTTGCTTTGGTGGTTCTCTTCGCACATATATTTTACACCTTGGTTGGTAAGCAAGCAGTTCTGTCAATCCTTCTTGCATCATTTGCTGGGTTTGGTGTAGTGATGAGTGGAAGTTCAGTTCTTGTGGAGTTTTTAAAATGGAGAAGAAGATGGCAGGCTCTATCAGAGCAGCAGCATGGTTCTAGAGTGATGACACAAGAAGGACAATACCCTCAAACTGTAAATACCCCACATTCAAATCAGAGCTGA 1473 0.4202 MSAEQKHDAASSPVHKVDDKMGVIDETSHVNNWRRQNLLLEIPSRTTEESSSFSSASQGFFGIRMPLTPSPTPTHKRVNFLVTSRSVDAPINNDPLPSSSSRGKSSIRSILPKLNFRYRTSSSDIEKATTAAPEGSFSGHQEKSSSISRSVSLSKIFAPKINRTSSLPVEEIGRANTESALGGCLGGSPYIRENQGTIARSRSEPVDNQEKSIRRMDRFFRIVPSTPRVKEVNEWLKNMSTANDTENDSEGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNAQTQNTGARSQQENDLRIWQELPVLVIVSMLAYFCFLEQLLVGKMKTRAIFISLPFSCVLGLLSSLTSSTMVRSRFIWIYAAAQFALVVLFAHIFYTLVGKQAVLSILLASFAGFGVVMSGSSVLVEFLKWRRRWQALSEQQHGSRVMTQEGQYPQTVNTPHSNQS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00688 490 SUPERFAMILY RING/U-box 257 312 - -
Rops7g00688 490 CDD RING_CH-C4HC3_MARCH 261 309 - -
Rops7g00688 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 316 IPR013083 -
Rops7g00688 490 PANTHER OS02G0165000 PROTEIN 15 473 - -
Rops7g00688 490 SMART ringv_2 260 309 IPR011016 GO:0008270
Rops7g00688 490 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
Rops7g00688 490 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Rops7g00688 490 MobiDBLite consensus disorder prediction 1 23 - -
Rops7g00688 490 MobiDBLite consensus disorder prediction 467 490 - -
Rops7g00688 490 MobiDBLite consensus disorder prediction 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00688 Rops-Chr7 9064559 9068786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00688 258 315 C3H Transcription Factor Family AT2G37950 47.458 3.22e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00688 - - cam:101488558 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00688 7 9064559 9068786 Rops7g00688 7 9064559 9068786 ECH
Rops7g00688 7 9064559 9068786 Rops3g00944 3 12018755 12023995 PCT