Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00684 ATGGCTAAAGATGTTGAGGTTGCAGAACACGGTGAATACTCAGCTAAGGACTACCATGACCCACCTCCAGCACCATTGATTGACCCAAAAGAGCTTACAAAGTGGTCTTTGTACAGAGCTGTGATAGCAGAGTTCATAGCAACCCTTCTCTTCCTTTACATCACTGTGTTGACCATTATTGGTTACAAAAGACAGAGTGATACTTCCATTACAGGTAACACTGAGTGTGATGGAGTTGGTATTTTAGGCATAGCTTGGGCCTTTGGTGGCATGATCTTCATACTTGTTTACTGCACTGCCGGTATCTCAGGAGGACACATAAACCCTGCTGTGACATTTGGGCTGTTAGTGGGACGCAAGGTGTCACTTGTAAGGGCAATACTTTACATGATAGCACAGTGCTTAGGTGCAATCTGTGGTGCTGGACTTGCCAAGGGGTTCCAAACTTCATACTACAACAGGTATAAAGGTGGGGTTAACTTAGTCTCAGACGGGTATAACAAAGGCACGGCTTTGGGTGCTGAGATCATTGGCACCTTTGTACTAGTCTACACTGTCTTTGCTGCTACTGATCCTAAGAGAAACGCTAGGGACTCTCATGTTCCTGTATTGGCACCACTTCCAATTGGATTTGCTGTTTTCATGGTTCACTTGGCTACAATTCCTGTGACCGGTACTGGAATTAACCCTGCAAGGAGTTTTGGACCAGCTGTGATCTTCAACAATGAAAAAGCCTGGGATGACCAATGGATTTACTGGGTTGGACCATTTATTGGAGCTGCTGTGGCTGCCATCTACCACGAATACATTCTCAGAGCATCAAACATGAAAGCTCTTGGATCCTTCAGGAGCAATGCTTAA 861 0.4518 MAKDVEVAEHGEYSAKDYHDPPPAPLIDPKELTKWSLYRAVIAEFIATLLFLYITVLTIIGYKRQSDTSITGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLVGRKVSLVRAILYMIAQCLGAICGAGLAKGFQTSYYNRYKGGVNLVSDGYNKGTALGAEIIGTFVLVYTVFAATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNEKAWDDQWIYWVGPFIGAAVAAIYHEYILRASNMKALGSFRSNA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00684 286 Gene3D Glycerol uptake facilitator protein. 24 286 IPR023271 -
Rops7g00684 286 Pfam Major intrinsic protein 31 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops7g00684 286 SUPERFAMILY Aquaporin-like 30 272 IPR023271 -
Rops7g00684 286 CDD MIP 39 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops7g00684 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 275 IPR034294 -
Rops7g00684 286 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops7g00684 286 FunFam Probable aquaporin PIP1-2 24 286 - -
Rops7g00684 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Rops7g00684 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops7g00684 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops7g00684 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops7g00684 286 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops7g00684 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops7g00684 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00684 Rops-Chr7 9031762 9033547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00684 1 286 Major Intrinsic Protein MIP AT2G37170 77.972 1.26e-167 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00684 K09872 - gmx:732581 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00684 7 9031762 9033547 Rops7g00684 7 9031762 9033547 ECH
Rops8g03305 8 71657242 71658760 Rops7g00684 7 9031762 9033547 ECH
Rops6g00979 6 23658424 23659313 Rops7g00684 7 9031762 9033547 ECH
Rops7g00684 7 9031762 9033547 Rops3g00948 3 12065177 12067250 PCT