Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00678 ATGGCCATGGATGTGGCTCATCACAGAGAAAGCAGCATTGACAAACACCTTGATTCTTCTGGCAAATATGTGCGCTACACTTCAGAACAGGTTGAAGCTCTTGAAAGGGTTTACACAGAATGCCCCAAACCCAGTTCCTTGAGGAGGCAACAACTAATCAGAGAATGTCCCGTTCTTGCCAACATAGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAACCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTAGGCTTCAGGGTGTGAACAGGAAACTATCAGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGGTTGCAGAAACAGGTGTCACAGTTGGTATGCGAGAATGGATATATGAAGCAACAATTGCATACACCTTCAATAGCAGCAACTTCTGATGCCGGTGGTGATTCGGTGGCTACTACTCCTCGGAATTCTTCCATGAGAGATGCTAATAACCCTGCTGGATTCCTATCAATTGCAGAGGAGGCTTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAATTTAGAACCTACAAAGATTGCGGAGATCTTAAAAGATCGTCCATCTTGGTTTCGGGATTGTCGGAGTCTAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACACTGGCTCCTGCCCGGGATTTCTGGACTATAAGATACACTACTAGTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTGTCTGGTTCTGGTTCCGGGCCTAATGCAGCTGCTGCTGCTCAGTTTGTGAGGGCTGAAATGCTCCCTAGTGGCTACTTGATTCGACCGTGCGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTAGAGGCATGGAGTGTGCCAGAAGTGCTGCGACCACTTTATGAATCATCAAAAGTGGTAGCTCAAAGAATGACAATTGCAGCACTTCGATATATTAGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTATATAGCTTGGGTAGGCAACCTGCTGTTCTGAGAACTTTTAGCCAAAGGTTGAGTAGAGGCTTCAATGATGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTACTGAACTGTGATGGCGCTGAGGATGTTATTATTGCAGTTAATTCAACCAAGAATTTGAGTAGCACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTACTCCAAAACATCCCTCCTTCAGTTTTAGTTCGCTTTTTGAGGGAACATCGCTCAGAGTGGGCTGATTTTAATGTTGATGCCTATTCTGCTGCATCACTTAAAGCTGGCTCCTATGCCTATCCAGGAATGAGGCCCATGAGGTTCACTGGCAGTCAAATAATGATGCCGCTTGGACATACAATTGAACATGAAGAGACGCTAGAAGTTATTCGCCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGTTATGCAGTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCTGAGCTCATATTTGCTCCCATTGATGAAATGTTCCCGGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTATCCCATTGGATTCACAACCAGGTGATAAAAAGGACACAACAAGAACCTTGGATTTGACATCCGGTCTTGAAGTAGGCCCAGCAACAATTCATACTGCTGGAGATGCATCATCGTGTCATAACAATCGATCAGTGTTGACTATTGCCTTCCAATTTCCTTTTGAGAGCAGTCTGCAGGATAATGTTACGGTCATGGCACGTCAATATGTCCGAAGTGTAATTTCCGCTGTGCAGACAGTTGCCATGGCTATATCTCCATCTGGTGTAAACCCAACTGTTGGAGCAAAACTCTCACCTGGCTCTCCAGAAGCTCATACTCTAGCTCAATGGATCTGCCAGAGTTTTAGTTATTATTTGGGGACGGAACTGCTGAGATCTGATTCTCTAGTCGGTGATTTGGTACTAAAACATTTGTGGCATCATCAGGATGCCATTTTGTGCTGTTCTTTGAAGTCAATGCCTGTGTTCATCTTTGCAAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAAGACATCACTTTGGATAAAATATTCGACGAGTCTGGACGCAAGGCATTGTTTTCAGATTTTGCCAAGTTAATGCAGCAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCAACAATGGGACGTCATGTTTCATATGAGCAAGCCATTGCATGGAAAGTGCTTGCTGAAGAAGATAACAGTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2520 0.448 MAMDVAHHRESSIDKHLDSSGKYVRYTSEQVEALERVYTECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLSAMNKLLMEENDRLQKQVSQLVCENGYMKQQLHTPSIAATSDAGGDSVATTPRNSSMRDANNPAGFLSIAEEALAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVNLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPMTLAPARDFWTIRYTTSLDNGSLVVCERSLSGSGSGPNAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQRMTIAALRYIRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSSTSNPASSLTFLGGILCAKASMLLQNIPPSVLVRFLREHRSEWADFNVDAYSAASLKAGSYAYPGMRPMRFTGSQIMMPLGHTIEHEETLEVIRLEGHSLAQEDAFVSRDIHLLQLCSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSQPGDKKDTTRTLDLTSGLEVGPATIHTAGDASSCHNNRSVLTIAFQFPFESSLQDNVTVMARQYVRSVISAVQTVAMAISPSGVNPTVGAKLSPGSPEAHTLAQWICQSFSYYLGTELLRSDSLVGDLVLKHLWHHQDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALFSDFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLAEEDNSVHCLAFSFINWSFV* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00678 839 SUPERFAMILY Bet v1-like 162 374 - -
Rops7g00678 839 FunFam Homeobox-leucine zipper protein REVOLUTA 22 77 - -
Rops7g00678 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 839 IPR044830 GO:0003700
Rops7g00678 839 SMART HOX_1 19 85 IPR001356 GO:0003677
Rops7g00678 839 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Rops7g00678 839 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Rops7g00678 839 Coils Coil 91 118 - -
Rops7g00678 839 CDD homeodomain 22 82 IPR001356 GO:0003677
Rops7g00678 839 CDD bZIP 74 113 - -
Rops7g00678 839 Gene3D - 15 87 - -
Rops7g00678 839 SUPERFAMILY Homeodomain-like 17 84 IPR009057 -
Rops7g00678 839 SMART START_1 162 372 IPR002913 GO:0008289
Rops7g00678 839 MobiDBLite consensus disorder prediction 129 154 - -
Rops7g00678 839 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Rops7g00678 839 Pfam MEKHLA domain 695 838 IPR013978 -
Rops7g00678 839 Pfam START domain 163 370 IPR002913 GO:0008289
Rops7g00678 839 CDD START_ArGLABRA2_like 157 373 - -
Rops7g00678 839 Gene3D - 197 379 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00678 Rops-Chr7 8967047 8973962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00678 1 839 Homeobox Transcription Factor Family AT5G60690 81.176 0.0 1427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops7g00678 START 4.2e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00678 K09338 - gmx:100804870 1488.01