Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00675 ATGAAGGAAGTTGAGAGGAGCTTGGATCCACAACTATGGCACGCATGTGCCGGAGGAATGGTTCAAATGCCTCCAGTGAACTCCAAAGTTTTCTACTTTCCACAAGGGCATGCCGAACACGCACAATCCAACATTGATTTCGGAGCTTCCATGAGAATTCCACCACTGATTCTCTGCCGCGTGGCAGCTGTTAAATTCTTGGCTGACCCTGAAACCGATGAAGTCTTTGCAAGTATAAGGTTGGTTCCTTTGAGAAATTCAGAGCTTGATTATGAAGATAATGGTGCTGTTGATGGTAATGGTTCGGAGAATTCAGAGAAGCCTGCATCTTTTGCCAAGACTTTGACTCAATCTGATGCCAACAATGGTGGGGGCTTTTCTGTTCCGAGGTACTGTGCAGAAACCATCTTTCCGAGGCTTGATTACTCGGCTGAACCGCCGGTTCAGACCGTGATAGCCAAGGATGTTCATGGTGAAGTTTGGAAGTTTAGGCATATATATAGAGGAACACCACGTAGACACTTGCTTACAACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCAGGGGATTCTATTGTGTTTCTGAGGGCTGAAAATGGTGATCTTTGTGTTGGAATTCGAAGAGCCAAGAGGGGAATTGTTGGTGGGTTAGAAGCACCATCTGGATGGAGTTCTGGTACCGGAAGTTGTGGTCTTGGACCTTATGGGGCTTTTTCTGTTTTCCTGAGAGAAGAGAGCAAGCTATTGAGAAATGGTTGTGGGAACTCTAGTCCTGGTGGTGGTGGTGCTGGTAATCTGAGTGGAAGACCAAAAGTGAGTGCTGAATCTGTCAGGGAGGCTATGATGCTAGCTGCTAGAAATGAACCGTTTGAAGTTGTTTATTATCCAAGAGCAAGTACCCCCGAGTTTTGCATTAAGACTTCAGCTGTGAGAGCTGCTATGAGAATTCAATGGTGCTCTGGAATGAGGTTTAAGATGCCCTTTGAAACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGGACTGTAGCTTCTGTTCAGGTTGTTGATCCTATCCGTTGGCCTAATTCCCCTTGGCGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAGTTGGTATCAAACATGTCAATCATCAATCTCACACCCTTTTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGACTTCCCCCTTGATGTTCAATTTCCAATACCAACAACATTTTCAGGCAACCCCCTTGGGCCTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACAATAAACTTCAGTTGGGGGTGCTTCCAACTAATGTCCAACAGCTTGATTTGCATAATGGAATTTCAAATGGCAACATAACCAACCATGATAATAAGAGCAAAGAAAGTTTATCATGCTTGCTTACCATGGGAAATTCTCACAAGAGTTTGGAGAAATCTGATAATGTTAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTAACTGAGCAACAAATTTCTAGAAGAGCTTCTAGTGATGTGTTGTCTCAGGACAATTCACCAGATGAGAATAAGGACAAAAAGAAGTGTTCTTTTAGGGACTCCCAATTTTCACCAGAAAAGTCTTCTACTGCTGAGTTTTCTTGGCAACTTGGTTTGGATACCGGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGGAGGACCCTAGACCTGTCACGTCTTGGTTCTTATGAAGAACTATACAGAATACTTGCCAACATGTTTGGAATAGAAAGGTCTGAGATGTTGAGTCATGTACTCTACCGTGACGCAACAGGTGCTGTTAAACAAACTGGGGAAGAACCCTTCAGTGATTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAGGCAGCAAAGATACTAGAAGGGTTTGGATTACAGGAACTAGGAATGCTGAACGTGGATTGGATGCATCAAATAAGACAGGTCCTCTGAGCATATTTGCTTAA 2109 0.4414 MKEVERSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNIDFGASMRIPPLILCRVAAVKFLADPETDEVFASIRLVPLRNSELDYEDNGAVDGNGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIVGGLEAPSGWSSGTGSCGLGPYGAFSVFLREESKLLRNGCGNSSPGGGGAGNLSGRPKVSAESVREAMMLAARNEPFEVVYYPRASTPEFCIKTSAVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSIINLTPFSPPRKKLRFPQHPDFPLDVQFPIPTTFSGNPLGPSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNNKLQLGVLPTNVQQLDLHNGISNGNITNHDNKSKESLSCLLTMGNSHKSLEKSDNVKRHQFLLFGQPILTEQQISRRASSDVLSQDNSPDENKDKKKCSFRDSQFSPEKSSTAEFSWQLGLDTGHCKVFMESEDVGRTLDLSRLGSYEELYRILANMFGIERSEMLSHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTDSGSKDTRRVWITGTRNAERGLDASNKTGPLSIFA* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00675 702 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops7g00675 702 FunFam Auxin response factor 109 213 - -
Rops7g00675 702 Gene3D - 589 674 - -
Rops7g00675 702 FunFam Auxin response factor 321 394 - -
Rops7g00675 702 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Rops7g00675 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops7g00675 702 Gene3D - 109 213 IPR015300 -
Rops7g00675 702 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Rops7g00675 702 MobiDBLite consensus disorder prediction 554 570 - -
Rops7g00675 702 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Rops7g00675 702 SMART B3_2 111 213 IPR003340 GO:0003677
Rops7g00675 702 MobiDBLite consensus disorder prediction 542 573 - -
Rops7g00675 702 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Rops7g00675 702 CDD B3_DNA 110 211 IPR003340 GO:0003677
Rops7g00675 702 Gene3D - 321 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00675 Rops-Chr7 8933578 8937161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00675 4 672 B3 DNA Binding Superfamily AT4G30080 60.793 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops7g00675 B3 4.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00675 - - gmx:100778135 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00675 7 8933578 8937161 Rops7g00675 7 8933578 8937161 ECH
Rops7g00675 7 8933578 8937161 Rops3g00957 3 12190428 12194065 PCT