Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00674 ATGCCTGAGGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAAGAATTTTAATGGTCTGTCAGATGAGATTTTTGATGATGTCCTCAAGTTTTTTGATTTCCCACTGGAAGATGTGGAAGCTAATGTTGTGGAAGAAGATTGGGATGCTCAATTTAAAAGCCTTGGAGAGCCATGTTTTGATGTTTTTTCAGTATCATCAACTGGGCTGTGTGGAAAAACCCAGAATGAAAACCCCCAACTTGGGAAGGGCTTCTCTGCTTCTTGTAATGGGATTTCCCCAATAAAACAACCGGAAAAGACTGCTGGACCAAAATATGGAAAAACCATTCCCAACCCGAATGTCTCTTTCAATGGAAAAGATTTGCATCAATTCCAAACCTACAGCCCAATTTCTGTTTTTGAAAGCAGTAGTTCTTCCTCAGTTGAGAATTTCATCCCGGTAAAGCGTGCTCGAAGTAAACGCCTTCGTCGTTCAAGCTTTAGTCCTCTGTTCTTAATTCCATTCCCTATTTCTCCAGCTTTGCAAAAATATCAAAGGAACCCTGCCTCTGAATCTGATTTTGAAACATATGTTGCTGAGAAACTACTAAACAGAGAAAAAAAACAGAGGAAAAAGGATCTCTCCCTGCTCTCAGATGATTTTGAGATGAAGAGATCCTCGTCACAGGAGTCAATTGTCCACAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGGCCAATGGGTCCCAAGACGCTGTGCAATGCTTGTGGCGTTCGGTACAGGTCTGGCCGGCTCTTTCCTGAATACCGGCCTGCAGCTAGCCCTACTTTTGTAGCATCACTGCACTCAAACTGTCACAAGAAGGTAGTGGAGCTGAGAAGCAGAGCCACGCAGGAGGCTGTTAGGGGTTCTATGTTTGCTTCATCAAAACTTGCCAGAAATTCTGTAGGATAA 957 0.4326 MPEDIANMKDSWFFDKNFNGLSDEIFDDVLKFFDFPLEDVEANVVEEDWDAQFKSLGEPCFDVFSVSSTGLCGKTQNENPQLGKGFSASCNGISPIKQPEKTAGPKYGKTIPNPNVSFNGKDLHQFQTYSPISVFESSSSSSVENFIPVKRARSKRLRRSSFSPLFLIPFPISPALQKYQRNPASESDFETYVAEKLLNREKKQRKKDLSLLSDDFEMKRSSSQESIVHRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVELRSRATQEAVRGSMFASSKLARNSVG* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00674 318 Gene3D - 226 276 IPR013088 GO:0006355|GO:0008270
Rops7g00674 318 Pfam GATA zinc finger 232 265 IPR000679 GO:0006355|GO:0043565
Rops7g00674 318 ProSitePatterns GATA-type zinc finger domain. 232 257 IPR000679 GO:0006355|GO:0043565
Rops7g00674 318 ProSiteProfiles GATA-type zinc finger domain profile. 230 262 IPR000679 GO:0006355|GO:0043565
Rops7g00674 318 FunFam GATA transcription factor 221 308 - -
Rops7g00674 318 CDD ZnF_GATA 231 278 IPR000679 GO:0006355|GO:0043565
Rops7g00674 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 287 - -
Rops7g00674 318 PANTHER GATA TRANSCRIPTION FACTOR 45 300 - -
Rops7g00674 318 SMART GATA_3 226 276 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00674 Rops-Chr7 8920336 8923994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00674 15 307 C2C2-Gata Transcription Factor Family AT1G08010 38.614 6.48e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops7g00674 GATA 3.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00674 - - gmx:100813303 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00674 7 8920336 8923994 Rops7g00674 7 8920336 8923994 ECH