Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00643 ATGCCCTTGTTAGCTCACAGGGCCATTTCCTTGATGCCATTGCCAGATTCGTTAGTGGAGTTTGAACCTGCCATTAGGATGGAGTACAGGATGAAAGATTTTGGGCGGCTTACTTTCCAAGAGCCTAACCAAACAGGAAATTGGCCCAGGACACGTGGAAGCCCACATCTCTATATATTCCAAACCCACCCCTTACTTCACCAGAATTCTCGAACCCTAAGCCCTCGTTCGGGGTTCTCCTCTCTCACTGTAACACCAATTCCACTAGATATTTTTATTCTCACGTTTAGTAGATATTTTTCTTCTTACATTCCAATCCAAGAGAATAGACATCAGAGATTGACGATGGTGTCTGACGCTAGTAAGAAGAAGGCTGCACAGAAGAAGGCGGCAGCAGCGGCCAAAAGAGGAGGCAAGGTGGCGGCGGCAACGGCTGTAGCAGCTTCATCGAAAACGGCGTCGGACAAGGCAGCTGACAAACTCGCCAACGGAATTGGGGATATTCAGATATCTGATCGGACCTGCACCGGTGTCCTTTGTTCACATCCTCTTTCCAGGGATATTCGGATAGAATCTCTGTCAGTCACTTTCCACGGACATGATCTGATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTGCTTACGGCAATAGGTTGCCGAGAGCTTCCTATTCCAGACCACATGGATATTTATCACCTTACTAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTAAAATTGGAGAAAGAAGCTGAAACTTTGGCAGCACAGGATGATGGGGGTGGTGAAGCTCTTGAACGTGTTTATGAAAGATTGGAAGCCATGGATGCAGCAACTGCAGAAAAGCGTGCCGCTGAAATTTTATTTGGTCTAGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCGCGAGCTCTATTTATGAACCCGACCATTCTATTACTTGATGAACCAACCAATCACCTCGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAAAGCTGAAGATCTATACTGGTAATTATGATCAATATATCCAGACACGTGCTGAACTGGAAGAGAATCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCCCGATTCGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTACAGAGAAGGTGGCAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCGCCACCCGTCCTCCAATTTGTTGAGGTGACATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATCGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCAAATGGAGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGATTTGGCTCCTTTAGATGGCATGGTTCGACGCCATAATCACCTTCGCATTGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACATGGAAATGTCCGCCCTCCAGTTTATGATTAAAGAATACCCCGGAAATGAGGAAGAGAGGATGAGGGCAGCTATTGGGAAGTTTGGACTGTCAGGTAAAGCACAGGTGATGCCAATGAAGAACTTATCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGTTAGCTTATAGACAACCTCAATTGCTTCTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTTCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTTTGTGCAGATCAAACTGTGACCAGATGGGAGGGTGACATTATGGAATTCAAGGAGCATCTAAGGGCAAAGGCTGGTTTATCTGACTGA 2145 0.4508 MPLLAHRAISLMPLPDSLVEFEPAIRMEYRMKDFGRLTFQEPNQTGNWPRTRGSPHLYIFQTHPLLHQNSRTLSPRSGFSSLTVTPIPLDIFILTFSRYFSSYIPIQENRHQRLTMVSDASKKKAAQKKAAAAAKRGGKVAAATAVAASSKTASDKAADKLANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAETLAAQDDGGGEALERVYERLEAMDAATAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKIYTGNYDQYIQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLAPLDGMVRRHNHLRIAQFHQHLAEKLDMEMSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMEFKEHLRAKAGLSD* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00643 714 ProSitePatterns ABC transporters family signature. 332 346 IPR017871 GO:0005524|GO:0016887
Rops7g00643 714 CDD ABCF_EF-3 188 405 - -
Rops7g00643 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 431 IPR027417 -
Rops7g00643 714 FunFam Abc transporter f family member 1 188 452 - -
Rops7g00643 714 Pfam ABC transporter 515 646 IPR003439 GO:0005524
Rops7g00643 714 Coils Coil 406 426 - -
Rops7g00643 714 FunFam ATP-binding cassette sub-family F member 3 459 713 - -
Rops7g00643 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 693 IPR027417 -
Rops7g00643 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 714 IPR003439 GO:0005524
Rops7g00643 714 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 129 709 - -
Rops7g00643 714 Pfam ABC transporter 399 477 IPR032781 -
Rops7g00643 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 188 428 IPR003439 GO:0005524
Rops7g00643 714 Gene3D - 188 452 IPR027417 -
Rops7g00643 714 Pfam ABC transporter 206 360 IPR003439 GO:0005524
Rops7g00643 714 Gene3D - 464 712 IPR027417 -
Rops7g00643 714 SMART AAA_5 524 712 IPR003593 GO:0016887
Rops7g00643 714 SMART AAA_5 212 414 IPR003593 GO:0016887
Rops7g00643 714 CDD ABCF_EF-3 499 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00643 Rops-Chr7 8419740 8431932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00643 319 386 Calmodulin-binding Proteins AT2G36910 41.429 8.84e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00643 K06185 - gmx:100785099 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00643 7 8419740 8431932 Rops7g00643 7 8419740 8431932 ECH
Rops7g00643 7 8419740 8431932 Rops3g00990 3 12716771 12720713 PCT