Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00640 ATGCAGAGATCTGGGTATGGCAAAGATGGAATACACAGGTCTCTGAGACCTTCCCTTTCGTTACCAAAGGACCCCAACCTCTCTCTCGTTTCACGCCTCTTCACTAGAGTCTCCTCTTTTCCCTCCAAACCCGCTCTCATCGATGCCGACTCTTCTCAAACACTCTCCTTCTCCCAATTAAAGTCCCTTACAGTCAAAGTCTCCCACGGTCTCCTTCGCCTCGGCATCAACAAAAACGACGTCGTCCTCTTCCTCGCTCCCAACACCATCCTCTACCCCGTTTGCTTCCTCGCCGTCGTTTCCCTCGGCGCCGTCATCTCCACCGTCAACCCTTCTTACACCCCAGTTGAGGTTTCAAAACAAGTCAAAGACTCCAACCCAAAACTCATCATCACTGTCGCTGAATTATGGGACAAAATCAACAACCTCAACCTCCCCGCGGTTTTTCTCGGACCCTCCGCCGTGTCCCATTCCAACGTCATGAGTTTCGACGCGTTGATAAAACTCGGTGGGTCCCAGACAACGTTTCCGACCAATAACGTTAAACAGAGTGATACGGCGGCGCTTTTGTACTCTTCGGGAACGACGGGAGTGAACAAGGGTGTGATTCTTACTCATGGGAATTTCATTGCTGCTTCGTTGATGATTGGAATGGACGATGAATTGGCGGGGCAAATGCACGATGTGTTCCTTTGTGTTCTTCCGATGTTTCATGTCTTTGGGCTTGCGGTTATTACTTACGCTCAGCTTCAGAGGGGGAATGCTGTGGTGTCGTTGAAGAGGTTTGAGTTTGAAGTGGTTTTGAAGACTATTGAGAAGTATAGGGTGAATCATTTGTGGGTTGTGCCTCCTATTATACTTGCACTTGCTAAGCATGGTTTGGTTGATAAGTATAATCTTTCTTCTTTGAAGCATATTGGTTCAGGTGCTGCCCCTCTTGCGAAAGAATTGATGGAGGAATGTGCCAAGCGTTTCCCTCATGCCACCGTTTCTCAGGGCTATGGTATGACTGAGACTTGTGGGATTGTTTCTGTGGAGAATTCGAGAATGGGGGTTAGGCATACTGGGTCAACAGGAATGCTTGTTGCGGGAGTGGAAGCTCAAATAGTGAGTGTGGATACACTGAAGCCCCTCCCTCCTGGACAGCTGGGGGAGCTATGGGTACGAGGTCCTAATATGATGCAAGGTTATCACAACAATGCACAGGCCACCAGATTGACTATAGATAAGAAGGGATGGGTACATACAGGAGATCTTGGATATTTTGATGAGAATGGACAACTTTTTGTTGTTGACCGGATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATCCTGAAATACTTGATGCTGTGGTCATCCCATATCCTGATACTGAAGCTGGTGAGGTTCCAGTTGCCTATGTTGTTCGTTCACCCAATAGTTCACTAACCGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTGGCACCTTTTAAAAGATTGAGAAGGGTGACATTCATCAACACTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGACAAAGCACGATCCAAAATATAA 1617 0.4675 MQRSGYGKDGIHRSLRPSLSLPKDPNLSLVSRLFTRVSSFPSKPALIDADSSQTLSFSQLKSLTVKVSHGLLRLGINKNDVVLFLAPNTILYPVCFLAVVSLGAVISTVNPSYTPVEVSKQVKDSNPKLIITVAELWDKINNLNLPAVFLGPSAVSHSNVMSFDALIKLGGSQTTFPTNNVKQSDTAALLYSSGTTGVNKGVILTHGNFIAASLMIGMDDELAGQMHDVFLCVLPMFHVFGLAVITYAQLQRGNAVVSLKRFEFEVVLKTIEKYRVNHLWVVPPIILALAKHGLVDKYNLSSLKHIGSGAAPLAKELMEECAKRFPHATVSQGYGMTETCGIVSVENSRMGVRHTGSTGMLVAGVEAQIVSVDTLKPLPPGQLGELWVRGPNMMQGYHNNAQATRLTIDKKGWVHTGDLGYFDENGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDTEAGEVPVAYVVRSPNSSLTEEDVQKFIANQVAPFKRLRRVTFINTVPKTASGKILRRELIDKARSKI* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00640 538 CDD 4CL 21 530 - -
Rops7g00640 538 Gene3D - 436 537 IPR045851 -
Rops7g00640 538 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 435 - -
Rops7g00640 538 Coils Coil 531 538 - -
Rops7g00640 538 Gene3D - 10 435 IPR042099 -
Rops7g00640 538 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Rops7g00640 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 533 - -
Rops7g00640 538 Pfam AMP-binding enzyme 35 440 IPR000873 -
Rops7g00640 538 FunFam 4-coumarate--CoA ligase 2 436 537 - -
Rops7g00640 538 SUPERFAMILY Acetyl-CoA synthetase-like 24 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00640 Rops-Chr7 8386723 8391372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00640 1 538 Monolignol Biosynthesis Gene Families AT4G05160 67.647 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00640 K01904 - gmx:100797843 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00640 7 8386723 8391372 Rops7g00640 7 8386723 8391372 ECH
Rops7g00640 7 8386723 8391372 Rops3g00993 3 12790110 12794940 PCT