Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00639 ATGGGAAGAGCTCCTTGCTGTGATAAGGCAAATGTGAAGAAGGGACCATGGTCACCAGAAGAAGATTCAAAGCTGAAGGAGTATATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCAAACATTAAGCACGGAGAATTCTCCGAAGAGGAAGATAGAATAATTTGTAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATCATAGCTGCTCAGTTGCCAGGCAGGACTGATAATGATATCAAGAACTATTGGAACACTAAGCTAAAGAAGAAACTCATGGGGTTGCTTCCTGCATCTCATCAGAGAAAACTACCCTACCGATCCTCACCTCAAAACGCACCATTTCCTTCTCATCACTGCAGCTCTTATTACAGCCCAACATCAACCATATCTTTCACAGGCCTTGAACCAATTTCTGTTCCTTCATGTAGCACAAACTGCACAACAACCTCTCTCCCTCTTTACCAAAACCAAGAGTCCTTGGTTAGTGTTAGTCCCATGCAATATTACCCCATCACAGACACCCCTCTCATGTTTGGAAGTGAAGGAAGTTGCAGTTCATCTGATGGGAGCTGTAGTAAAGTTAGCCATGGCAAGCAAGAAGAAATCATGGGTTTTCAGAATTTCATGTACAACAATAAGTCCATGCTTGGTAGTCACGGCAACATTGATAATGATGTTAACCAATGGGCAGCAGAAAAGCAAAATGGGTGCTTTTTCCAAACACAAACCCAATTGGATTATGATCTTGAGGCTATTAAGCAACTGATTAACAGTTGTAATAATGGCTACTTGAGTATTGATGAAAACAAGACGGGGGAGAAGGGCATGTACTACTACTGA 918 0.4227 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPASHQRKLPYRSSPQNAPFPSHHCSSYYSPTSTISFTGLEPISVPSCSTNCTTTSLPLYQNQESLVSVSPMQYYPITDTPLMFGSEGSCSSSDGSCSKVSHGKQEEIMGFQNFMYNNKSMLGSHGNIDNDVNQWAAEKQNGCFFQTQTQLDYDLEAIKQLINSCNNGYLSIDENKTGEKGMYYY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00639 305 CDD SANT 70 111 IPR001005 -
Rops7g00639 305 Gene3D - 69 137 - -
Rops7g00639 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops7g00639 305 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops7g00639 305 FunFam Transcription factor RAX3 7 68 - -
Rops7g00639 305 FunFam Transcription factor MYB36 70 138 - -
Rops7g00639 305 CDD SANT 16 62 IPR001005 -
Rops7g00639 305 SMART sant 13 64 IPR001005 -
Rops7g00639 305 SMART sant 67 115 IPR001005 -
Rops7g00639 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops7g00639 305 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops7g00639 305 PANTHER OS09G0431300 PROTEIN 1 270 - -
Rops7g00639 305 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops7g00639 305 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Rops7g00639 305 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops7g00639 305 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00639 Rops-Chr7 8370732 8372481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00639 1 119 MYB Transcription Factor Family AT5G57620 91.597 1.10e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g00639 Myb_DNA-binding 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00639 K09422 - gmx:100796382 426.787