Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00631 ATGGACTCAATGGATGTTCACCAAGACACACTAGTAAACATCAATGATCTTGAGCTGCACGACTTCATTGAAAATCCCAACTTTGATCAGTTTATCAGTTTGATTCGAGGGGAGAATGAAGATGCCATGTGCAACTTCGGTTCTGACCTTGTCAATGACTACTTTGTTGATAATCAATTCCTTTCATGTCCTGGAAACCCTTTTGATCAGAACAATAACAATGCTGTGAATGTCTATGATCCAAGCTCTGCAATTAGATCCTTCTCTTGTTTTGATGGGGATAACAAGGGAGAAGGAGAAGAAGAAAATGATGCAGAGATTTCTTCTGCATTAACAACAACAACCACCACCACCACGGCTACTGAAACTGTTGATGCCAAACCAAGGGATAGGTCCAAGACTCTCATTTCTGAGAGAAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGATAAGGCCTCTATAATTGGAGATGCTGTATCATACGTGCATGAGCTTCAAGCACAAGCTAAGAAACTGAAGGCTGAGGTTACAGCACTTGAAGCATCCTTATTAGTGTCCCAAAATTATCAAGGATCTATTAACAACCCTATGAATGTTCAAGTCACCCATAACAGCCATCCAATCTGCAAGAAAATTATGCAGATGGACATGTTTCAAGTGGACGAAAGAGGGTATCATGTGAAAGTAGTGTGCAACAAAGGAGAAGGGGTGGCTGCCTCATTGTATACGGCTCTTGAGTCTCTTGCAGGTTTCAATGTTCAGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCTACTTACATTTACATTGAATGTAAAAGGTTCTGACCCAGAAATTAACCTTCCAAATTTGAAGTTATGGGTGACTTCTGCTCTTCTGAACCAAGGCTTTGAATTCATGGCATCGTTTCATGCTTGA 960 0.4083 MDSMDVHQDTLVNINDLELHDFIENPNFDQFISLIRGENEDAMCNFGSDLVNDYFVDNQFLSCPGNPFDQNNNNAVNVYDPSSAIRSFSCFDGDNKGEGEEENDAEISSALTTTTTTTTATETVDAKPRDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHELQAQAKKLKAEVTALEASLLVSQNYQGSINNPMNVQVTHNSHPICKKIMQMDMFQVDERGYHVKVVCNKGEGVAASLYTALESLAGFNVQNSNLATVCNSFLLTFTLNVKGSDPEINLPNLKLWVTSALLNQGFEFMASFHA* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00631 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 309 - -
Rops7g00631 319 MobiDBLite consensus disorder prediction 114 140 - -
Rops7g00631 319 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 125 195 - -
Rops7g00631 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 207 IPR036638 GO:0046983
Rops7g00631 319 Gene3D - 121 195 IPR036638 GO:0046983
Rops7g00631 319 SMART finulus 135 184 IPR011598 GO:0046983
Rops7g00631 319 MobiDBLite consensus disorder prediction 124 140 - -
Rops7g00631 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Rops7g00631 319 Pfam Helix-loop-helix DNA-binding domain 136 179 IPR011598 GO:0046983
Rops7g00631 319 Coils Coil 175 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00631 Rops-Chr7 8234805 8236780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00631 4 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.703 1.46e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g00631 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00631 K26214 - gmx:100805451 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00631 7 8234805 8236780 Rops7g00631 7 8234805 8236780 ECH
Rops7g00631 7 8234805 8236780 Rops3g01014 3 13080575 13082510 PCT