Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00629 ATGATGTTGTCTGAAATTGACATGGAAGGTATAGGCATGGAGGAACATGTTGGGTCGTGTAACAACGATGCGACAAACATCACCAAGGGGAAGCGAACCAAGCGGCGGCTGAAGCTTTTATCCCCTTGTGCCGTCACCGTCACCGCCGCCATGACTTCTAGCTGTTCTAGCGCTTCCGGCGGTGGTGACTATGGGTCATTTTCTTCCACCACCACCACCTTTGAGGGAACTGATCAGGAAGAAGAAGACATGGCTCACTGTTTGATTCTCCTAGCACAAGGAAGAGAAATAGATCCTTACCACCGTCATCGTAAGCAGCAAGTTGAAGAAGATAATAATAACAAGATGACAGAGAGGGGTATGGCTACAAAAATTGGTTTTGAGTGCAAAACGTGCAACCGAACATTCCCTTCGTTTCAAGCTTTGGGTGGACACAGGGCAAGTCACAAGAAACCCAAGGTGATGATGACACAAGAGGAAAAGAAGTCACCACCACTAATCACCAATAATACTACTTGTGAGTTTGAAGAAAGAAAGCAAATCCAAATGAAGATTGGTCCTATGGTTTCACTTGAATTAGGGTGTGGTAATACTAATAATAGAGGTGGTGATTTCTTTGGTAACAATAACAAGTCCAAGACAAAGATTCACGAGTGTTCCATTTGCGGTTCAGAATTCACATCTGGCCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCCTCTACCAATAACTCTGCTGGCGTCATCACCGCCATTCAGACAACCTGCGACGCCGCCACCGATGTTGATGTTAAGCCGAGGAATGTTCTAGAATTGGATCTCAACCTTCCTGCACCGGAGGATGATCTCCGGGATTCAAAGTTTCAGTTTCCGGTGACCCCAAAACCTATGGTGCTGTCTGCTGCTCCGGCTTTGGTGGGTTGCCATTATTAG 936 0.4658 MMLSEIDMEGIGMEEHVGSCNNDATNITKGKRTKRRLKLLSPCAVTVTAAMTSSCSSASGGGDYGSFSSTTTTFEGTDQEEEDMAHCLILLAQGREIDPYHRHRKQQVEEDNNNKMTERGMATKIGFECKTCNRTFPSFQALGGHRASHKKPKVMMTQEEKKSPPLITNNTTCEFEERKQIQMKIGPMVSLELGCGNTNNRGGDFFGNNNKSKTKIHECSICGSEFTSGQALGGHMRRHRASTNNSAGVITAIQTTCDAATDVDVKPRNVLELDLNLPAPEDDLRDSKFQFPVTPKPMVLSAAPALVGCHY* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00629 311 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Rops7g00629 311 Gene3D Classic Zinc Finger 126 239 - -
Rops7g00629 311 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Rops7g00629 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
Rops7g00629 311 Pfam C2H2-type zinc finger 217 241 - -
Rops7g00629 311 Pfam C2H2-type zinc finger 127 152 - -
Rops7g00629 311 PANTHER ZINC FINGER PROTEIN ZAT5 74 291 - -
Rops7g00629 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Rops7g00629 311 MobiDBLite consensus disorder prediction 143 168 - -
Rops7g00629 311 SMART c2h2final6 127 149 IPR013087 -
Rops7g00629 311 SMART c2h2final6 217 239 IPR013087 -
Rops7g00629 311 SUPERFAMILY beta-beta-alpha zinc fingers 127 239 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00629 Rops-Chr7 8167546 8168933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00629 14 311 C2H2 Transcription Factor Family AT2G28200 40.823 2.63e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00629 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00629 - - gmx:100788646 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00629 7 8167546 8168933 Rops7g00629 7 8167546 8168933 ECH
Rops7g00629 7 8167546 8168933 Rops8g03374 8 72633235 72634092 ECH
Rops8g03374 8 72633235 72634092 Rops7g00629 7 8167546 8168933 ECH
Rops6g00978 6 23647096 23648159 Rops7g00629 7 8167546 8168933 ECH