Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00628 ATGATTTCAAGGGCCTCACCTAGCTATCAAAGTGACCATCAAGGGCTGCAGATGTTTCCTGTCACTGAAGATTTGGAATCACCCTCTATGGAAGTAATTTCTGGTTCAGGTTCACCTTCTAGTTCCCTACTTTTCAATCTTTCTGTTCTCAAAGATAAGCTCAATCAGGTGCAAACCCTGGTGAGTGTTATCCTCTCCCCGAATCAAAGCCTATCCGAGTCAACTTCAATGGCCATATCCAGCATGAACTCCACAATCCAGGAAATCATAGTTACTGCCACATCAATGATGTTCACATGCCAACAAATGGCTCTCGGTTTCCCTCCTCCAGGTACTACTACTTGCACCAACGACTTGCACCAGCGCCAATCTGATCATGACATGTTGCCTCACTCAAGTAGAGGTGTGCTTAGTAACATAGGCACAGATATTAGAGGTCATAGTTTATTTTCTAATACTGAGTCAGAGGCATTGGACTGGTTTGGTGAAAGCTATAACAATAATGATGATGATGGTAATATTAACTGTAAGCTTAAGGATGATGATAGAAGTGTTGCAATTAGTGAAACCAATAATGATAGTAAGGGAGTACTGTCCTCAGGGGATGAACCTAATGAAGGGTGCAAAGGGCTTTCACCAAAGAACAATGATGATAATGATATAATTGAATTGGATGCTACGGATTTGTTGGCTAAGTACACGCATTATTGTCAAGTTTGTGGCAAAGGATTTAAGCGTGATGCTAATTTGAGGATGCACATGAGAGCTCATGGGGATGAGTACAAGACTAGTGCTGCCTTGAGTAACCCAATTAAGAAGAGGGGGAGTTTGAGTGGGGGCAGAGATTGTTTGATGAGTATGAAGCCCAAGAAATATTCATGTCCTCAAGAAGGATGTAGGTGGAATAAAAAGCATGCCAAGTTTCAGCCTTTGAAGTCCTTGATTTGTGCTAAAAATCATTACAAGAGAAGCCATTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAATTCTCAGTGCTTTCTGATCTCAGGACCCATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGTTCCTGTGGCACTACATTTTCTAGAAAAGACAAGCTTATGGGCCATGTTGCATTGTTCGTAGGGCACCACCCAGCTATCAATGGCTTCTCATACTTAGAGAAGCAGGCATTGCAAATGCAGAATGATGGTAGTTCAAGATGA 1221 0.4267 MISRASPSYQSDHQGLQMFPVTEDLESPSMEVISGSGSPSSSLLFNLSVLKDKLNQVQTLVSVILSPNQSLSESTSMAISSMNSTIQEIIVTATSMMFTCQQMALGFPPPGTTTCTNDLHQRQSDHDMLPHSSRGVLSNIGTDIRGHSLFSNTESEALDWFGESYNNNDDDGNINCKLKDDDRSVAISETNNDSKGVLSSGDEPNEGCKGLSPKNNDDNDIIELDATDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPIKKRGSLSGGRDCLMSMKPKKYSCPQEGCRWNKKHAKFQPLKSLICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHHPAINGFSYLEKQALQMQNDGSSR* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00628 406 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 37 389 IPR044300 GO:0010044|GO:0010447
Rops7g00628 406 FunFam Zinc finger protein 574 234 259 - -
Rops7g00628 406 Gene3D Classic Zinc Finger 221 295 - -
Rops7g00628 406 Gene3D Classic Zinc Finger 328 378 - -
Rops7g00628 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 262 IPR013087 -
Rops7g00628 406 MobiDBLite consensus disorder prediction 188 216 - -
Rops7g00628 406 SMART c2h2final6 330 352 IPR013087 -
Rops7g00628 406 SMART c2h2final6 235 257 IPR013087 -
Rops7g00628 406 SMART c2h2final6 292 325 IPR013087 -
Rops7g00628 406 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
Rops7g00628 406 SUPERFAMILY beta-beta-alpha zinc fingers 233 260 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00628 Rops-Chr7 8157576 8158796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00628 40 385 C2H2 Transcription Factor Family AT5G22890 48.747 9.00e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g00628 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00628 - - gmx:100802769 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00628 7 8157576 8158796 Rops7g00628 7 8157576 8158796 ECH