Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00625 ATGGCGAAAGGTACGGATTCAGATGAGTTTGTTTTGCTTTCTAGGGTTAGAACGGGTCTCAAGAGGGAGTTTGCATTTGCCATGAAGGCTCAATCTGAGATCGGTGGTTCTTTGGGTCGAACCAGGGCTAGCAAGAACCGGAGTGAGGTTCCGGTTCAGACCGCTCCGGTTAGAAAGCGGTCTAGGAAATCCAGTTCTTCCGAAGATTCCGTGGTCAAGGTGAAGAACAATGAGGATGTGGTGAAGAACGATGAGGATGTGGGCGATGCCATGAGTGAGGAAGAGGCTATGAGTGATGTTGTGGATCTTGCAAGTGATGATGAGCCCAAGAACCAAGTGGGAGAATCTATTGCAGTGCCTATTTGTGAAGAGGAGCCAAAGAGTGATGTGGTGGTGGAAACTGTGATCGATGAAGAGCCTAAGTTTGTTGAGTCTTTGAAGGATGAGGTTAATGATGAATTAGCACAACCCCTTTGTGAAACCAAAGAGGATTTGGAGAAGGGTGTTCCTCCAGAGGGGAAAGAAACCAGTGGAACCCCTTTGGTTAATGATGATGTAAAGGGGAAGAAGATACCTTTAGAGAAGCCAATGAGAAGATTTACACGGTCAGCATTGAAGCAAAAATCTGAGGAAACAAAGATAATAAATGATGGGGAACATGCTAGTGCCGTTGGAATTGATGATAATGTTAAAAGGGAAACTGAGGCTTCGCCATTAATAACCACTCCAACTCCAATGAAAATGGCCAAGACTACATTGAAGAAGTTTCCTACTAAGCTAAAGGATCTTCTTGCTACAGGGATTATTGAGGGATTACCGGTGAAGTATGTCAGGGGAAATAAGGCACGGAAAGATGGAGAAACAGGGTTTAGAGGAGAGATTAGAGGCTCTGGAATTTTGTGCTATTGTGGGAGATGTAAGGGGGTTGAGGTTGTCACTCCCACTGTGTTCGAGCTGCATGCTGGTAGTTCAAACAAACGTCCCCCGGAGTATACTTACCTTGACAATGGAAATACTCTCCGTGATGTCATGAATGCCTGTTTGACTGTTCCATTGGACAGCTTGGAAGAAGCCGTACAAAAGGTCCTTGGCGACTTCACTTTGAAGAAATCTAACATCTGTTTGATCTGCAGAGTGTCTATTGTTGAAGCTGGCAAGAGTGTGTCAAGACTAGTATGTGATTCATGCATGGAATTGAAAGACACTCAACCTAGCCTTCCTCAAACAGCCGTGACAAGCAGAAGTGTTTCACCAGAAGTTCAACCCAGATCACCAGAACCTGTTGTGGTTCCAAAGTCATTAAAATCACCAGAACCAGATGTGGTTCCGAAGTCATTAAACAATGGGATGAAACACAGTACATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGAAAGGATCTACGCTTGCATAAGTTGGTATTTGAAGAAGATGTGTTGCCAGATGGAACTGAAGTAGCCTACTATGCTCACGGAAAGAAATTGTTGGTTGGTTACAAAAAGGGATTTGGAATTTATTGTACCTGCTGCAACTCTGAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAGCCTTACCTCCACATATACACATCTGATGGAGTCTCTCTTCATGAGTTGTCCATCTCTTTGTCAAAAGATCAGAGGTTTTCTACCAATGATAATGATGACCTTTGCAGCATATGTGAAGATGGTGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTCTACCATGCATTCCAAGTGGTACTTGGTATTGTAAATATTGCCAGAATCTTTTCCAGAAAGACAAACATGGGGAACATAATCAGAATGCTCGGGCAGCTGGAAGAATTGGGGGAACAGATAACCGAAGATGCATTCGCGTTGTCAAAACTATAGAGGTTGACCATGGTGGCTGTGCCTTGTGCAGGCGTCATGATTTCAGCAAAAGCTTTGGTCCTCGGACAGTAATCATTTGTGATCAGTGTGAGAAGGAATATCATGTTGGGTGTCTGAAGGATAATAACATGCAGAATCTGGAGAAATTGCCTGAAGGGAATTGGTTCTGCAGCACAAGTTGCAGTCAAATTCATTCCACTCTGCTGAATTTGGTGGCTTCTGGGGAAAATAATCTCCCGGATTCTTTTCAAAATTTGATAAAAAAGAAGCATGAAGAGAAAGGTTTAGACACTGGGGTTGGTCTTGATATTAAATGGAAGGTTCTGAATTGGAAATTAGCTGCTTCTGTTGAAACTAGGCAATTGCTTTCAAAGGCTGTTGCCATATTCCATGAGAGGTTTGATCCTATAGTTGATTCTACTTCTGGCCGTGACTTCATTCCAACAATGCTGTATGGAAGGAACATCCGTGGCCAAGATTTTGGTGGAATGTACTGTGCACTGCTCACTGTCAACCAAGTTGTTGTGTCTGCAGGAATATTTCGTGTCTTTGGGTCAGAAGTCGCAGAGCTACCACTAGTGGCTACCATTGCCGATTACCAAGGACAGGGTTACTTTCAGTGCTTGTTTTCTTGCATTGAGAGACTGCTTGGGTCTCTAAGCGTGAAAAACCTTGTCCTACCGGCTGCGGATGAAGCTGAATCAATATGGACTAGTAAATTTGGGTTTACAAAGCTAGAGCAAGAAGAGATAAACAACTACAAGAAATTTTATCATATGATGATATTTCAAGGGACCTCAGTACTACAGAAGCCGGTTTCTGCACTCTGA 2754 0.4368 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEIGGSLGRTRASKNRSEVPVQTAPVRKRSRKSSSSEDSVVKVKNNEDVVKNDEDVGDAMSEEEAMSDVVDLASDDEPKNQVGESIAVPICEEEPKSDVVVETVIDEEPKFVESLKDEVNDELAQPLCETKEDLEKGVPPEGKETSGTPLVNDDVKGKKIPLEKPMRRFTRSALKQKSEETKIINDGEHASAVGIDDNVKRETEASPLITTPTPMKMAKTTLKKFPTKLKDLLATGIIEGLPVKYVRGNKARKDGETGFRGEIRGSGILCYCGRCKGVEVVTPTVFELHAGSSNKRPPEYTYLDNGNTLRDVMNACLTVPLDSLEEAVQKVLGDFTLKKSNICLICRVSIVEAGKSVSRLVCDSCMELKDTQPSLPQTAVTSRSVSPEVQPRSPEPVVVPKSLKSPEPDVVPKSLNNGMKHSTSRGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYAHGKKLLVGYKKGFGIYCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSDGVSLHELSISLSKDQRFSTNDNDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNLFQKDKHGEHNQNARAAGRIGGTDNRRCIRVVKTIEVDHGGCALCRRHDFSKSFGPRTVIICDQCEKEYHVGCLKDNNMQNLEKLPEGNWFCSTSCSQIHSTLLNLVASGENNLPDSFQNLIKKKHEEKGLDTGVGLDIKWKVLNWKLAASVETRQLLSKAVAIFHERFDPIVDSTSGRDFIPTMLYGRNIRGQDFGGMYCALLTVNQVVVSAGIFRVFGSEVAELPLVATIADYQGQGYFQCLFSCIERLLGSLSVKNLVLPAADEAESIWTSKFGFTKLEQEEINNYKKFYHMMIFQGTSVLQKPVSAL* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00625 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 625 IPR013083 -
Rops7g00625 917 MobiDBLite consensus disorder prediction 61 87 - -
Rops7g00625 917 ProSiteProfiles Zinc finger PHD-type profile. 562 607 IPR019787 -
Rops7g00625 917 MobiDBLite consensus disorder prediction 37 51 - -
Rops7g00625 917 PANTHER AUTOIMMUNE REGULATOR 60 914 - -
Rops7g00625 917 MobiDBLite consensus disorder prediction 407 462 - -
Rops7g00625 917 ProSitePatterns Zinc finger PHD-type signature. 565 604 IPR019786 -
Rops7g00625 917 Gene3D - 744 912 - -
Rops7g00625 917 MobiDBLite consensus disorder prediction 35 111 - -
Rops7g00625 917 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 551 628 - -
Rops7g00625 917 SUPERFAMILY FYVE/PHD zinc finger 553 607 IPR011011 -
Rops7g00625 917 MobiDBLite consensus disorder prediction 165 187 - -
Rops7g00625 917 Pfam Tify domain binding domain 292 347 IPR032308 -
Rops7g00625 917 Pfam Tify domain binding domain 498 546 IPR032308 -
Rops7g00625 917 SMART PHD_3 564 605 IPR001965 -
Rops7g00625 917 SMART PHD_3 647 703 IPR001965 -
Rops7g00625 917 SUPERFAMILY FYVE/PHD zinc finger 641 700 IPR011011 -
Rops7g00625 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 705 IPR013083 -
Rops7g00625 917 FunFam PHD finger family protein 744 913 - -
Rops7g00625 917 Pfam PHD-finger 565 606 IPR019787 -
Rops7g00625 917 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 803 897 IPR016181 -
Rops7g00625 917 CDD PHD1_AIRE 564 604 - -
Rops7g00625 917 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00625 Rops-Chr7 8126630 8134063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00625 253 914 PHD Transcription Factor Family AT2G36720 45.152 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops7g00625 TDBD 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00625 - - pcin:129313514 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00625 7 8126630 8134063 Rops7g00625 7 8126630 8134063 ECH
Rops7g00625 7 8126630 8134063 Rops3g01021 3 13212001 13217905 PCT