Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00596 ATGGAACCACCCGTGGTTGCGAGAAAAAGAGGTCGCCCGAGGAAACAGAGAAGAGAGGATGAAATCGTGACCGTTGATCCGAAATCAGTTCTCGAATCGATGAAAACGACATCGGTAGCATTGGTTGGACGATATGTGTTGAAACAGTTCCGAAGAAGCACCGTTCTTCTCGGAAAAGTTGTAAGTTATGAAAGTGGATTATACAAAGTAACGTATGAGAATGGCGGTTGCGAGAATTTGGATAGTAGAGATGTTCGTAAGATACTTCTAGATGACAGTTATTTTGATGATGAATTGATTCAAAGGAAGAATGAATTAGAGGAATCGTTATTGCCGAAGATCATGGATGAATCAGGGAAGGGTTCGAGTGAATTGCATGGTGATTTATTGGTTAAGGAAGAGGAACGAGATGAAATGGAGGTTGATTCGTCTGGTGATTCAATGGAATCTAGTTCTGATACTGAAACTCCGTTGCCGTTACCGTTACCGCCACCATTGGTGTTACCAAAGTCTTCGGGAACTATTGGTGTGCCGGAGCAGTATGTTCAACACCTCTTTGCAGTTTATGGATTCCTACGGTCGTTTAGCACTCGATTGTTTCTGAGTCCGTTTACTTTGGATGAGTTTGTTGGCTCTCTTAACTGCCGAGTTTCAAACACATTGCTTGATGCCATTCATGTTTCCCTTATGCGTGTTTTGAGACGTCATCTTGAAAACCTTGCAGCTGAGGGTTCGCAGCATGCATCAAAATGCCTTAGGTGCAGTGATTGGAGCTTGCTTGATACCTTGACTTGGCCTGTGTTTGTGATTCAGTATTTAGTAGTTAATGGATACACAAAGGGACCTGAGTGGACAGGATTTTATGATGAGATTTTTTATGGCGAGTATTATTTATTGCCTGCAAGTAGGAAATTAATAATATTGCAAATCCTCTGCGATGATGTTTTGGATTCTGAGGAGCTAAAAGCTGAAATGAACCTACGTGAAGAATCAGAGGTTGGGATGGATTATGAAGCTGAAGATATCTTTCCTGCTGAAAATGGGCCGAGAAGAGTCCATCCAAGATATACTAAAACTACTGCTTGCAAGGACAATGAAACTATGAAGTTTGTTTCAGAATTAAGTGCTGTGAATCCACATGGTAATGCTGAGGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCACATACCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATTAATATGATTGGGCCAAAAATTGCACAGGGAACATCACTTAAAGGGGCTGAAATATTTGGAAGGGACTTGTATGGGCAACTTTTCATGGGTGCTTGCGACCACTTACTGGTGCTCAATGTCAACGATGGTGAATTTTGTCTTAAATACTACAATCAGAACGACGTTCCTGAAGTTCTTCAAGTGCTTTATGCATCCATGCAACATAGGCCTATATACTATGATATTTGCATGGCAATATTGCAGTATTGGAATATTCCAGAAAGCTTCTTACATCTTTGTGTTACAACTGGACCAGATATAAACTCTGCAAATACGAAGATAGATGCAAACTTCTCTGCTGCATTACCACCTCCGATGGCTGAAGAAGATCATAAAACTGATAGTTTGGAGATGGCAGGATACGGTCTAACATCCGTGAGTGGGATTTGTAGTGATAATATGGTACCATCTCTTGATTCTTCATTGGTTACCACTCAAGGCCCCGCTCATGAAAGTAGTGGCAATGCTACAACTAAGGAGTTCCCTACCGTGAATGTGAAGCTTCATGAGGAAACTGTGATGGATTCGGTTGTTTCCACTGTTAACCATCAGTGTGACGTGAACTATCAAAATTCTGTTCATAGGTCAACTGTAGTCAATCCTGCCAAGTGCTCCTTGGTAAGCAGCCAATTTAATAATTATGGGCATGCAAATGACATGGGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGGTGTGAAGCTGGTTTTGGAAAGTGCAAAGGCAGTATTTCTAATGATTTTGTGTACATGGGTTGCTCCTTTAAACCTCAGTCATACATGAATTACTATATGCATGGTCATTTTGCTGCATCCGCTGCTGCTAACTTGGCCATTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCAGACAACCTGAGCAAAGCTACATCTGGGAACACTTATTTGCTAGCAAAGGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAATCCCTTGTTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACCAAAAGTGCTATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAGGGAATTATCCCTAGCATTGTAACATATGTTATATACATGGAGGAAAGCTTACGTGGTTTAATAGATGGACCCTTTCTAAGTGAAAACTATAGAAAGCAATGGCGTAAGCAAGTGGAACGAGCTGCAACATTTAGGGACATAAAGCCCCTTTTACTCAAACTCGAGGAGAACATTCGCACAATTGCTTTTTGTGGGGACTGGGTGAAGCTGATGGATGATTGGCTGGTCAAATTTTTTATAATCCAAAGTGCTGCATGTACTCTTGGAACAACACAGAAACGTGCACCATGTGGTCGGCGTAAAAAACAGTTATCTATCGAAGAAGTTAAAGTTGATGCTCGCCGTGAAAACTTTACCTGGTGGCCTGGTGACAAATATACCAAATCTGTATTTCAGAGAGCTGTTTTACCAAAATCCATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTCGAGGAAAATTTTAGGCATTTTCTATGCTGATGGTTCTGAAATTCCTAAAAGAAGCCGACAGCTAATTTGGAGAGCTGCAGTTGAGATGTGTAGGAATGCATCACAGCTGGCACTTCAGGTCCGGTATCTAGATTCTTATATCAGATGGACTGATCTGATTCGTCCTGAGCATAACCTCCAGGACGGGAAAGGTCAGGATACTGAAGCTTCTGCTTTTAGAAATGCAAATGTTTGTGACAAAAAACATGTAGAGGGAAAATTTTTTTATGGTATAGCTTTTGGGAGCCAAAAGCATCTTCCTTCTCGGGTGATGAAAAATGTTGAAATAGAGCAAGGACCACAAGGAAAGGAGAAGTACTGGTTTTCTGAAATGCGCATTCCTTTATATTTGATAAAAGAGTATGAAGTAGGCATTAAAAAAGTGCCATGTGATAAAGAGCACTTGAATATCGCATCTCAGTTGCACAAAAGGCGGTTGAAAGCTAGCTGCAAGGACATATTTTTTTACCTCACCTGCAAGAGAGACAAATTGGACGTTTTATCATGTTCTATATGTCAGCAGGGTGTTTTATTTGGGAACGCTTTCAAGTGCAGTGCATGTCAAGGTTATTGTCATGAGGGCTGTTCCATAAATTTGACAGTCTCTACATATGAAGAAGTTGAGTTCTTGACTTCTTGCAAAAAATGTTATTATGCCAAATTACTTACTAAAAAGAGGACCAGTATTGAATCTCCAACTAGTCCCTTAATCTTACAAGGACAAGGAGATAGCTCATTAACAGTGCTGAAGGAGCCGAGGCCTAAATGTTATGATGAAGCACTGAGATCTACCAGGACAAAGGGTAGTCGTCCTGACAAGAAACAGGTTGCTTCAGATTCCAGCCGTCGCGGAAACTGTTCTTGGGGTATTATATGGAAAAAGAAGAATAGTGAAGATACAGGCATTGATTTCAGGCTCAGGAACATAATTCTAAAGGGAGGTTCAGGTTTGCCTCAATTGCAACCTGTTTGTCACTTGTGCCAGAAACCATATAGGTCTGATCTAATGTATATTTGCTGTGAAACATGCAGAAATTGGTATCACGCAGATGCTATTGAACTTGAAGAGTCCAAAATTTTTGATGTGCTGAGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTGTGTCCTTACTCTGATTTCACGTGCAAGAAGGAAGAGGGCAAGAAGTCACATTCAAGGGCTTCAAAGAAAGAGCATTCTGGAGCAGACTCTGATTCTGTAATGCTTACTGACATGGGAGTATGTGAGCCTGCCACTCCTATCTTTCCCGTAGAGGATGTCTCTAGACAAGAGATTGATCCTCTGCTGTTCTCTCTTTCAAATGTCGAGCTGATTACAGAACCCAAATTAGAAACAGATATTGAGAACAATACTGTCTCTGGGCCAGGGCCTCAGAAATTACCAGTGAGAAGGCATATTAAATGTGAGGAGGACAATAATGGTGGTTCTTTTGGAGATCAACTTCTGCATGCTGAATTTTCAACACCCAATGAAATGGGTAATCTGTCCAAATCTGCAGAGGTTTCATCACCTTGTGTAGATTATGGCTCTGCTGTGCTCGCTGACACCAATCTTCTGAATGACTCTGAAATTGTAAATTATGAAAACATGGAGTTTGAACCCCATACCTACTTCTCTTTGACTGAACTGCTGCATTCTGATGATAACAGTCAATATGAGGAAGCTGATGTGTCCGGGGACTTGTCAGGATATTTAAAAGATTCTGATACATTAGGTGTTCCTGAAGAATGTGGAACTGTTAAGCTAGAAGAGTACAGCTGGGGACATGAAAATTCATTACAAGGGAGTATTTATAATTGTTTGCTATGTTCCCAAATCGAACCTGCCCCGGATCTCTTTTGTCAGGTCTGTGGGATTTGGATTCACAGCCAATGTTCACCTTGGGTTGAATCACCATCTAGGCTTGCAAATTGGAAGTGTGGTAATTGCCGGGAATGGCAATAG 4947 0.4152 MEPPVVARKRGRPRKQRREDEIVTVDPKSVLESMKTTSVALVGRYVLKQFRRSTVLLGKVVSYESGLYKVTYENGGCENLDSRDVRKILLDDSYFDDELIQRKNELEESLLPKIMDESGKGSSELHGDLLVKEEERDEMEVDSSGDSMESSSDTETPLPLPLPPPLVLPKSSGTIGVPEQYVQHLFAVYGFLRSFSTRLFLSPFTLDEFVGSLNCRVSNTLLDAIHVSLMRVLRRHLENLAAEGSQHASKCLRCSDWSLLDTLTWPVFVIQYLVVNGYTKGPEWTGFYDEIFYGEYYLLPASRKLIILQILCDDVLDSEELKAEMNLREESEVGMDYEAEDIFPAENGPRRVHPRYTKTTACKDNETMKFVSELSAVNPHGNAEDGDVDRNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPEGAWYCPECKINMIGPKIAQGTSLKGAEIFGRDLYGQLFMGACDHLLVLNVNDGEFCLKYYNQNDVPEVLQVLYASMQHRPIYYDICMAILQYWNIPESFLHLCVTTGPDINSANTKIDANFSAALPPPMAEEDHKTDSLEMAGYGLTSVSGICSDNMVPSLDSSLVTTQGPAHESSGNATTKEFPTVNVKLHEETVMDSVVSTVNHQCDVNYQNSVHRSTVVNPAKCSLVSSQFNNYGHANDMGLPMNLSLQTKGCEAGFGKCKGSISNDFVYMGCSFKPQSYMNYYMHGHFAASAAANLAILSSEDSRSEGHVSDNLSKATSGNTYLLAKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKSLVSSKRGCMLNHAALSATKSAMKILSGLAPVRSGEGIIPSIVTYVIYMEESLRGLIDGPFLSENYRKQWRKQVERAATFRDIKPLLLKLEENIRTIAFCGDWVKLMDDWLVKFFIIQSAACTLGTTQKRAPCGRRKKQLSIEEVKVDARRENFTWWPGDKYTKSVFQRAVLPKSMVRKAARQGGSRKILGIFYADGSEIPKRSRQLIWRAAVEMCRNASQLALQVRYLDSYIRWTDLIRPEHNLQDGKGQDTEASAFRNANVCDKKHVEGKFFYGIAFGSQKHLPSRVMKNVEIEQGPQGKEKYWFSEMRIPLYLIKEYEVGIKKVPCDKEHLNIASQLHKRRLKASCKDIFFYLTCKRDKLDVLSCSICQQGVLFGNAFKCSACQGYCHEGCSINLTVSTYEEVEFLTSCKKCYYAKLLTKKRTSIESPTSPLILQGQGDSSLTVLKEPRPKCYDEALRSTRTKGSRPDKKQVASDSSRRGNCSWGIIWKKKNSEDTGIDFRLRNIILKGGSGLPQLQPVCHLCQKPYRSDLMYICCETCRNWYHADAIELEESKIFDVLSFKCCKCRRIKSPVCPYSDFTCKKEEGKKSHSRASKKEHSGADSDSVMLTDMGVCEPATPIFPVEDVSRQEIDPLLFSLSNVELITEPKLETDIENNTVSGPGPQKLPVRRHIKCEEDNNGGSFGDQLLHAEFSTPNEMGNLSKSAEVSSPCVDYGSAVLADTNLLNDSEIVNYENMEFEPHTYFSLTELLHSDDNSQYEEADVSGDLSGYLKDSDTLGVPEECGTVKLEEYSWGHENSLQGSIYNCLLCSQIEPAPDLFCQVCGIWIHSQCSPWVESPSRLANWKCGNCREWQ* 1649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00596 1648 ProSitePatterns Zinc finger PHD-type signature. 395 436 IPR019786 -
Rops7g00596 1648 SMART PHD_3 1600 1645 IPR001965 -
Rops7g00596 1648 SMART PHD_3 1159 1208 IPR001965 -
Rops7g00596 1648 SMART PHD_3 1314 1362 IPR001965 -
Rops7g00596 1648 SMART PHD_3 394 437 IPR001965 -
Rops7g00596 1648 MobiDBLite consensus disorder prediction 1 20 - -
Rops7g00596 1648 ProSiteProfiles DDT domain profile. 179 239 IPR018501 -
Rops7g00596 1648 SUPERFAMILY FYVE/PHD zinc finger 1311 1368 IPR011011 -
Rops7g00596 1648 SMART testlast3 179 239 IPR018501 -
Rops7g00596 1648 MobiDBLite consensus disorder prediction 132 164 - -
Rops7g00596 1648 Pfam PHD-finger 395 437 IPR019787 -
Rops7g00596 1648 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 294 326 IPR028942 -
Rops7g00596 1648 CDD PHD_SF 1314 1361 - -
Rops7g00596 1648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 441 IPR013083 -
Rops7g00596 1648 ProSiteProfiles Zinc finger PHD-type profile. 392 439 IPR019787 -
Rops7g00596 1648 SUPERFAMILY FYVE/PHD zinc finger 1588 1646 IPR011011 -
Rops7g00596 1648 MobiDBLite consensus disorder prediction 1255 1275 - -
Rops7g00596 1648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1310 1368 IPR013083 -
Rops7g00596 1648 PANTHER PHD FINGER FAMILY PROTEIN 34 1443 - -
Rops7g00596 1648 SUPERFAMILY FYVE/PHD zinc finger 381 441 IPR011011 -
Rops7g00596 1648 MobiDBLite consensus disorder prediction 1255 1270 - -
Rops7g00596 1648 Pfam DDT domain 181 236 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00596 Rops-Chr7 7642915 7650522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00596 269 539 EF-hand Containing Proteins AT5G22760 47.766 1.27e-75 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Rops7g00596 DDT 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00596 - - gmx:100808614 2384.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00596 7 7642915 7650522 Rops7g00596 7 7642915 7650522 ECH
Rops7g00596 7 7642915 7650522 Rops3g01040 3 13613045 13628583 PCT