Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00594 ATGGGGAGCAAGGTCAGCGACCACCACATATCCACCGTCCGATCCATCGTCGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTACACATGGCCAAAAACGACGTCAACGCTGCCATCAACATCATCTTCGACACCAATCACACCACCAAATTCAAACCCACTCGCACCACCACCAACAATTCGCGACGAGTTTCTCCTCCGAAACCGACCTCTCCCGCTGTTACCGCCACCAATTCCAATTACAACGACGGCGGAGGAGACCGTGATAACCGCTCTGTTGTTGGTTCCGATGATTGGTGGTTCGTAGGTTCTGGCGAAGTGTCAGGGTTGTCCACGTGTAAAGGGAGGACTATAAATTCCGGTGATGCAGTTTTATTCAAGTTTCCCACTAAGTCACTCTCTACTTCACCCTCTCCGGGTAAGGGTTTTGGACGAGCGGCAACTTGTTCTGAGATAGTTCGATTCTCCACCGAACAAGCTGGAGAGATTGGTAGAATACCAAATGAATGGGCTCGGTGTCTCTTGCCTCTGGTGAGGGATAATAAGGTCAAGATTGAGGGGCATTGTAAATTTGCGCCTAATGTTTTGGGCATCATGGACACCATTATTTTGTCAATCAGTGTCTTCATCAATAGGTCAGTGTTTGGTAAGCATCATCACCAGGTTTCTCTCAAGGATGCTGCAAATTCCACTGATGAATCAGTGTTTCATCCTCTTCCAACCCTGTTTCGGTTGCTAGGCCTGAGCCCTTTTAAGAAGGCAGAGTTAACTCCTGGTGACTTTTATTCCAACAAGCGTCCTTTCAGCCAAAGGGTCACTTTATTACATGCCAAGTCTGATCGTCCTTCTCAAAATGGTTATGAGAATGAAGATGAGGATTCAATTTCTGAAATCGATCTTGACAACATTGTTGGTGTCGGATCAAACTCAGAGTTAGAGGAAATGGATCCCCCTGGAAATCTTCTGTGTGAACTGCGGCCATATCAAAAGCAGGCTCTTTATTGGATGATACAGATGGAGAAGGGACGATCTATGGACGAGACAGCAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCATTTTCTGGTGAAGGCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTTCTTGCCCAATTAGGAAGGGGTGGATCATTAGGCAGTCAACCCATAACCCAGTCCTTTATTGAAGGTGGAGAAGTTAGTGATACAGTGCACAATTGTTCAAACATACCAAAGAAGGCAACCAAATTTACTGGTTTTAATAAACTGATAAAGCAAAAGAATGCTGTAACAAGTGGTGGCACCTTGATAATATGTCCCATGACTCTTCTCGGGCAGTGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCTCTATCTCTATATGTTCATTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTAGCTCAAAGTGATGTTGTAATTACTACATACGGAGTTTTGGCCTCTGAATTTTCCACTGAGAATGCAGAGGAAAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCTGCTGCTCTTATTGCTGACAAACGTTGGTGTCTCACCGGGACTCCTATCCAGAACAATCTCGAGGATATTTACAGCCTTCTTCGGTTTTTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTGATTCAGAAACCATTTGAGGGTGGTGATGAGAGAGGGTTGAAGTTAGTTCAGTCCATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATCCTGGTTCTCCCTCCAGCTGATATGCAAATAATTTACTGTGAACCCACAGAAGCTGAAAAGGACTTTTATGAGGCCCTATTCAAAAGATCCAAGGTAAAGTTTAACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAACTATGCTTCAATATTAGAGTTACTCTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACCTATAATGCTTCTGAAGGTGAAGTAAAAGATGCACCCTCACGGGCTTATATTCAAGAAGTCGTGGAAGAGCTACGTAAAGGGGAGCAGGGAGAATGTCCAATATGTCTTGAAGCATTTGAAGATGCCGTATTGACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTTTTGGCAAGTTGGCGAAATTCTACTTCTGGTTTTTGTCCTGTTTGTAGGAAAATAATCAGCAGGCAGGATCTTATCACTGCCCCAACTGAGAGTCGGTTTCAGATTGATATTGAGAAGAACTGGGAAGAGTCATGCAAGGTAACTGTTTTATTGAATGAACTTAAAAATCTTAGCCGATCAGGCTCCAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTTTGGACCTCTTGCAGATTCCCTTTACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTTTGAATCAGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGCAACACCCTGGTGTTGTTGATGTCACTAAAAGCCGGAGGAGTGGGTATAAACCTAACGGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCGGCCGTAGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTGGCTATCAGACGTTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCGCGTAAACAACGAATGATTTCTGGTGCCTTGACCGATCAAGAAGTTCGAACTGCACGGATTGAAGAGTTGAAGATGTTTTTTACTTAG 3030 0.4459 MGSKVSDHHISTVRSIVGSEFTDMDIIRALHMAKNDVNAAINIIFDTNHTTKFKPTRTTTNNSRRVSPPKPTSPAVTATNSNYNDGGGDRDNRSVVGSDDWWFVGSGEVSGLSTCKGRTINSGDAVLFKFPTKSLSTSPSPGKGFGRAATCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDNKVKIEGHCKFAPNVLGIMDTIILSISVFINRSVFGKHHHQVSLKDAANSTDESVFHPLPTLFRLLGLSPFKKAELTPGDFYSNKRPFSQRVTLLHAKSDRPSQNGYENEDEDSISEIDLDNIVGVGSNSELEEMDPPGNLLCELRPYQKQALYWMIQMEKGRSMDETATTLHPCWEAYRLADKRELVIYLNAFSGEGTIEFPSTLQMARGGILADAMGLGKTIMTISLLLAQLGRGGSLGSQPITQSFIEGGEVSDTVHNCSNIPKKATKFTGFNKLIKQKNAVTSGGTLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQSDVVITTYGVLASEFSTENAEENGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFNQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLSKLAKRFLRGTYNASEGEVKDAPSRAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGFCPVCRKIISRQDLITAPTESRFQIDIEKNWEESCKVTVLLNELKNLSRSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNQQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMFFT* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00594 1009 Pfam SNF2-related domain 330 718 IPR000330 GO:0005524|GO:0140658
Rops7g00594 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 997 IPR027417 -
Rops7g00594 1009 SMART HIRAN_2 104 212 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops7g00594 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 836 IPR013083 -
Rops7g00594 1009 SMART helicmild6 873 956 IPR001650 -
Rops7g00594 1009 SMART ring_2 774 813 IPR001841 -
Rops7g00594 1009 FunFam DNA repair protein RAD5B 382 641 - -
Rops7g00594 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 640 IPR027417 -
Rops7g00594 1009 MobiDBLite consensus disorder prediction 52 91 - -
Rops7g00594 1009 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 844 1004 IPR001650 -
Rops7g00594 1009 Pfam Zinc finger, C3HC4 type (RING finger) 774 813 IPR018957 GO:0046872
Rops7g00594 1009 ProSitePatterns Zinc finger RING-type signature. 789 798 IPR017907 -
Rops7g00594 1009 Pfam HIRAN domain 104 208 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops7g00594 1009 Gene3D - 385 652 IPR038718 -
Rops7g00594 1009 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 98 1008 - -
Rops7g00594 1009 SMART ultradead3 323 624 IPR014001 -
Rops7g00594 1009 SUPERFAMILY RING/U-box 761 820 - -
Rops7g00594 1009 Gene3D - 656 1009 IPR027417 -
Rops7g00594 1009 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 602 IPR014001 -
Rops7g00594 1009 ProSiteProfiles Zinc finger RING-type profile. 774 814 IPR001841 -
Rops7g00594 1009 MobiDBLite consensus disorder prediction 52 88 - -
Rops7g00594 1009 CDD DEXDc_SHPRH-like 327 640 - -
Rops7g00594 1009 CDD SF2_C_SNF 842 967 - -
Rops7g00594 1009 Pfam Helicase conserved C-terminal domain 844 956 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00594 Rops-Chr7 7592861 7603011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00594 1 1009 RAD5 or RAD16-like Gene Family AT5G22750 69.913 0.0 1474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops7g00594 SNF2_N 7.1e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00594 K15505 - gmx:100794452 1758.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00594 7 7592861 7603011 Rops7g00594 7 7592861 7603011 ECH